hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg06649/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4086 ( 1158 res) mbg06649 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Kinesin Kinesin motor domain 572.0 3.9e-168 1 DUF593 Protein of unknown function, DUF593 -34.0 0.9 1 Filament Intermediate filament protein -194.1 0.99 1 MAP65_ASE1 Microtubule associated protein (MAP65/ASE1 -258.2 0.8 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Kinesin 1/1 146 459 .. 1 424 [] 572.0 3.9e-168 DUF593 1/1 477 560 .. 1 94 [] -34.0 0.9 Filament 1/1 797 1051 .. 1 359 [] -194.1 0.99 MAP65_ASE1 1/1 522 1071 .. 1 726 [] -258.2 0.8 Alignments of top-scoring domains: Kinesin: domain 1 of 1, from 146 to 459: score 572.0, E = 3.9e-168 *->RvRPlnerEksrgs.vvvnvsedvessrltn.gkkktFtFDkVFdpe R+RPln+ E+ rg++++ + +++ ++ k + FD+VF+p+ mKIAA4086 146 RFRPLNQAEILRGDkFI-----PIFQGDDSViIGGKPYVFDRVFPPN 187 atQegssepYAsqefvyesvakPlvesvleGyNgtiFAYGQTGSGKTYTM +t qe+vy +a ++v++vl+GyNgtiFAYGQT SGKT+TM mKIAA4086 188 TT----------QEQVYHACAMQIVKDVLAGYNGTIFAYGQTSSGKTHTM 227 eGppesdkesgnptddsytlpeeepGiiPRaledlFerieerkerkpvfK eG+ +++ +GiiPR+ +d+F++i mKIAA4086 228 EGKLH---------------DPQLMGIIPRIARDIFNHI----------- 251 Pklnekgwellnsqetligvsfdrglssdly.v.ndlefsvkvSylEIYN y+++++lef++kvSy+EIY mKIAA4086 252 ------------------------------YsMdENLEFHIKVSYFEIYL 271 EkirDLLspsppqrgspskanekkkkkpLrireDpkrGgkmdgvyVeGLt kirDLL+ + k++ L ++eD++r ++V+G+t mKIAA4086 272 DKIRDLLDVT-------------KTN--LSVHEDKNRV-----PFVKGCT 301 eveVssaeevlelLelGnknRtvasTkmNerSSRSHaiFtitveqrntds e Vss+ee+l ++++G +nR+va T+mNe+SSRSH+iF i ++q+n + mKIAA4086 302 ERFVSSPEEILDVIDEGKSNRHVAVTNMNEHSSRSHSIFLINIKQENVE- 350 tgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEaan +e+ ++kL+LVDLAGSE++skTg A+g L Ea+n mKIAA4086 351 ------------TEQKLSGKLYLVDLAGSEKVSKTG---AEGAVLDEAKN 385 INkSLsaLGnVInALadkqkssHiPYRDSKLTrLLqDSLGGGDNsKTlMI INkSLsaLGnVI+ALa++ +s++PYRDSK Tr+LqDSLGG N++T+M+ mKIAA4086 386 INKSLSALGNVISALAEG-TKSYVPYRDSKMTRILQDSLGG--NCRTTMF 432 aniSPsssrNntnyeETLsTLrFAsRAKnIk<-* ++SPss+ n ET sTL F++RAK Ik mKIAA4086 433 ICCSPSSY----NDAETKSTLMFGQRAKTIK 459 DUF593: domain 1 of 1, from 477 to 560: score -34.0, E = 0.9 *->verLretveeerkalqdLyeELeeERnASAsAAnEAMaMIlRLQeEK e+ +e+ +++++++++L +EL Rn E + +RL +E mKIAA4086 477 YEKEKEKTKAQKETIAKLEAELSRWRN------GENVPETERLAGED 517 AalqMEArQYqRmmEEqaehDqealq..lLedlLykREkeiqaLekEle< al E + EE+ D+ +++ ++ ++ k E+ei L k+l+ mKIAA4086 518 SALGAE------LCEETPVNDNSSIVvrIAPEERQKYEEEIRRLYKQLD 560 -* mKIAA4086 - - Filament: domain 1 of 1, from 797 to 1051: score -194.1, E = 0.99 *->nEKeqmQnLNDRLAsYI.dK...VRfLEqqNkeLevkieelrqkqsr E + +Q ++++dK+++ + E+ +k+Le++ e +r+ + r mKIAA4086 797 DELARLQAHETVHEVALkDKepdTQDAEEVKKALELQMENHREAHHR 843 ggpasvsrlyslYeteieeLRrqidqltnerarlqlEidnlrealedfrk ++rl++ ei+e ++ id+l + +lqlE+++l++++e++++ mKIAA4086 844 ----QLARLRD----EINEKQKIIDELKDLNQKLQLELEKLQADYERLKN 885 KyedKe.DLaaQnqlkdlEialntkeaeLaTaL.eRqea.EndlvgLRaQ + +K + ++l T L eR e + dl+gL mKIAA4086 886 EENEKSaK----------LQEL--------TFLyERHEQsKQDLKGL--- 914 iAklEslaaRkdlDeaTLarvDLEnkvEsLqEElaFLKknHeEEvkeLqa e+T ar ++++L L+k++ v ++ mKIAA4086 915 --------------EETVAR-----ELQTLHN----LRKLF---VQDVTT 938 qiqdtgqvnVEm...DaarqqEwklDLtkaLrEiRaQYEeiAeknrqeaE ++ + +Em+++D++ i +Q mKIAA4086 939 RVKKS----AEMepeDSGG--------------IHSQ------------- 957 ewYksKleeLqtaaarngealrsaKeEitElRRqiQsLeiELqslksqna k+K++ L ++ + ++ + +lR + Le +L + + mKIAA4086 958 ---KQKISFLENNLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVK 1004 sLErqlaElEeryeaelaqyqalisqlEeeLqqlreEMarqLrEYQeLLd +LE +l E++e + + yq + e+++ + + ++ mKIAA4086 1005 ALEGALKEAKEGAMKDKRRYQQEVDRIKEAVRYKSSGKRGHSAQ------ 1048 VKlaLDiEIATYRKLLEGEEsR<-* IA + mKIAA4086 1049 --------IA-----------K 1051 MAP65_ASE1: domain 1 of 1, from 522 to 1071: score -258.2, E = 0.8 *->ekdasladikkhissfekdlveeeifsskkqailkdIavlraElerL +++ +++ s++ + ee ++ i+ +l+ + + mKIAA4086 522 AELCEETPVNDNSSIVVRIAPEER--QKYEEEIRRLYKQLDDKDDEI 566 sselGieedisnrlLhRiNDPSGiKTiPDLYiRNAiLlteaktvqlsekk s ++ mKIAA4086 567 -------NQQSQLI------------------------------------ 573 qlskkskvdigqrpdsipllvwl....lkLrdqlesLkilkhLIQslkrl ++ +q d + llv+ +++++k+ l++L Qs + mKIAA4086 574 ------EKLKQQMLDQEELLVSTrgdnEKVQRELSHL-------QSENDA 610 lmvltearkqkaeRraeikeL...lhqllqLcneLGepplsldFiiDlkk a ++ +e ++ + eL +++q q +e+ + +l mKIAA4086 611 ------AKDEVKEVLQALEELavnYDQKSQEVEEKSQQNQLL-------- 646 daeplpLsdvidleeleelRerlgelreekvkRLeevdslkqeIkslcee ++l+ + + +l + l l+e ++ + + + + ++ +e mKIAA4086 647 -VDELSQK----VATMLSLESELQRLQEVSGHQRKRIAEVLNGLMRDLSE 691 LgvepktlIrtdfEsdvlsYeelleStserpNdhcvtrEtidkL...... v + E ++ e ++ + v r i+k++++ ++ mKIAA4086 692 FSVIV-----GNGEIKLP-----VEISGAIEEEFTVARLYISKIksevks 731 ....dkmlenLaaqkkeredkiddLreqiseLWnRLqisdEeqkiFHNVT +++ +lenL+ + +++ ++++ L is+ e+k mKIAA4086 732 vvkrCRQLENLQVECHRKMEVTGRELSSCQLL-----ISQHEAK------ 770 CSiALTErrvreasslsq..........esikrleeEveRLealKkqnlK +r + + q+ + ++++ +es++ l++E+ RL+a + mKIAA4086 771 ---------IRSLTEYMQtvelkkrhleESYDSLSDELARLQA--HETVH 809 kfIedlRieIeElWDllfySeEqRksENFspyyeelytSATTLkedEqLL ++ ++ ++ +eE+ k+ el+ E mKIAA4086 810 EV------ALKDKEPDTQDAEEVKKA-------LELQM--------ENHR 838 elhEnEikrLKeeyssnKeILelvekwesLwermeeLEakasDpNRfnAn e+h ++rL e + +I + + + +++eLE D R+ n mKIAA4086 839 EAHHRQLARLRDEINEKQKIIDELKDLN--QKLQLELEKLQADYERLK-N 885 RGRRDPGhKiLTLKEEKeRKrltrkLPkvaeqLtekvtaweeergtpFLf + EK +K+ +e+ +FL+ mKIAA4086 886 EE-----N-------EKSAKL--------QEL--------------TFLY 901 hGeplLerldiqqqqieadwerkrqrkqrskkrkktatktssvmrtpskr er++q+kq + +++ +v r + mKIAA4086 902 --------------------ERHEQSKQ------DLKGLEETVAREL--- 922 kgSlvpsTpgtlrnsrnitmstkslkktprltksstsekaslaskstgnl T lr++ t +k+ + s +++ s + mKIAA4086 923 ------QTLHNLRKLFVQDVTTRVKKSAEMEPEDSGGIHSQKQKISFLEN 966 kkratsrrastlppltgasrsekeNlirskanpsaskaasSplqrnlksp + + l + ++ r e++ l+ + + +a ++ k + mKIAA4086 967 NLEQLTKVHKQLVRDNADLRCELPKLEKRLRATAERVKALEGALKEAKEG 1016 enkvkkvrvldihlrrkstkgri.stgstneekkrelkkvpksppksevv ++k r ++r + r++s g++ + +++ p+ p+s+ mKIAA4086 1017 --AMKDKRRYQQEVDRIKEAVRYkSSGKRGHSAQIAKPVRPGHYPASSPT 1064 nspakps<-* n+ + s mKIAA4086 1065 NPYGTRS 1071 //