hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbh/mbh02992/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4085 ( 512 res) mbh02992 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- DUF1055 Domain of Unknown Function (DUF1055) 253.1 3.7e-72 1 UCH Ubiquitin carboxyl-terminal hydrolase 153.9 2.7e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF1055 1/1 17 159 .. 1 147 [] 253.1 3.7e-72 UCH 1/1 178 465 .. 1 273 [] 153.9 2.7e-42 Alignments of top-scoring domains: DUF1055: domain 1 of 1, from 17 to 159: score 253.1, E = 3.7e-72 *->eLketLiEgvDYvLvPqEvWrkLvsWYgleeGGPpieRKVIeqGlyq L+e L Eg+DYvL+P+ +W++ vsWYgl++G+PpieRKVIe++ + mKIAA4085 17 HLRERLLEGDDYVLLPAPAWNYMVSWYGLMDGQPPIERKVIELPGIR 63 ksysVEVYpleLkLtdgrDssksiTiRlSKkdsIgelyrevCelfsveqe k VEVYpleL+L+ ++D+++ +Ti++S +ds+ +++ +++e f+ve++ mKIAA4085 64 K---VEVYPLELLLVQHSDMETALTIQFSYTDSVELVLQTAREQFLVEPQ 110 ketRiWdyyekkkyelLddldekTvedAgLqmdQdIliEarkvDGtwsSq ++tR+W +++++++++L ++ +T++dA L+++Q++++E+r++DGtw+S+ mKIAA4085 111 EDTRLWTKNSEGSLDRLCNTQ-ITLLDACLETGQLVIMETRNKDGTWPSA 159 <-* mKIAA4085 - - UCH: domain 1 of 1, from 178 to 465: score 153.9, E = 2.7e-42 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfhipplrdyllsdsyeseinesnpl pg++GL NlGNTC+mNS+LQcL+++p+l++y+l+++y e+n +npl mKIAA4085 178 PGICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPL 224 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvvpsplkflqfkttlgkineefsgym g+kg+l++a+adL+++ +sg ++s+vp++ fk+ +g+++++f gy+ mKIAA4085 225 GMKGELAEAYADLVKQTWSGyHRSIVPNV-----FKNKVGHFASQFLGYQ 269 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxx xxx xxxxxxx QqDAhEFllfLLdgLhedlnrvnkkpytepe.sdkrpd.kaa.eawknhs Q+D++E+l+fLLdgLhedlnrv+kk+y e + +rpd ++a+eaw+nh+ mKIAA4085 270 QHDSQELLSFLLDGLHEDLNRVKKKEYVELCnGAGRPDlEVAqEAWQNHK 319 RF xxxxxxxxxxxxxxxxx lrneslitdlFqGqles................................. +rn+s+i+d F+G ++s+ ++++++ + + ++ + + + + ++++ + mKIAA4085 320 RRNDSVIVDTFHGLFKStlvcpdcgnvsvtfdpfcylsvplpvcsrrvle 369 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx .............rlkisrLPpiLiihLKRFkydgetgmnkKindkVefP + +++++++++ +V P mKIAA4085 370 vffvpmdprrkpeQH------------------------------RVVVP 389 RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx leLdlssyctae.................pplkYeLyaVvvHsGsslsgG ++s++c+a +++++ +++ + ++ Y+Ly mKIAA4085 390 KKGNISDLCVALsthtsvapdkmivadvfSHRFYKLYQL-----E----- 429 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxx HYiayikkkkknnkWykfDDekVsevseeevle...rsssAYiLFY<-* ++ + + D+ ++++ ++++++ + +Y mKIAA4085 430 --------DPLSGILDR--DDIFVYEVTGRIEPvegSRDDIVVPVY 465 //