hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00122/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4083  ( 229 res)   mfj00122

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
NHL      NHL repeat                                      62.2    1.1e-14   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
NHL        1/3      45    75 ..     1    29 []    14.6      1.4
NHL        2/3      95   122 ..     1    29 []    38.7  1.3e-07
NHL        3/3     189   217 ..     1    29 []     8.8      7.6

Alignments of top-scoring domains:
NHL: domain 1 of 3, from 45 to 75: score 14.6, E = 1.4
                   *->lnrPhGvavdpsdGrvyVaD...senhrvqvf<-*
                      +++P+ + vd ++G+ y++D+++  n+r++++   
   mKIAA4083    45    FDNPAELYVD-DTGEMYIVDgdgGLNNRLVKL    75   

NHL: domain 2 of 3, from 95 to 122: score 38.7, E = 1.3e-07
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                      +n Ph+v++d   Grv+VaD++n r+qvf   
   mKIAA4083    95    FNIPHSVTLD-AVGRVWVADRGNKRLQVF    122  

NHL: domain 3 of 3, from 189 to 217: score 8.8, E = 7.6
                   *->lnrPhGvavdpsdGrvyVaDsenhrvqvf<-*
                         Ph + vd+++G vyVa+ +  ++q++   
   mKIAA4083   189    QVLPHLLEVDRKTGAVYVAEIGAKQIQKY    217  

//