hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj01350/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4080  ( 1323 res)   mfj01350

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
Pkinase     Protein kinase domain                       179.4    5.8e-50   1
DnaJ        DnaJ domain                                   2.4      0.015   1
Pkinase_Tyr Protein tyrosine kinase                     -11.1    3.5e-11   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
Pkinase       1/1      58   331 ..     1   287 []   179.4  5.8e-50
Pkinase_Tyr   1/1      58   331 ..     1   272 []   -11.1  3.5e-11
DnaJ          1/1    1249  1323 .]     1    79 []     2.4    0.015

Alignments of top-scoring domains:
Pkinase: domain 1 of 1, from 58 to 331: score 179.4, E = 5.8e-50
                   *->yelleklGsGsfGtVykakhkgtgkiVAvKiikkrkekskkdktarr
                      +++ ++l +G+f+ Vy+a++ g+g+++A+K++   +e+++  ++   
   mKIAA4080    58    LRVRRVLAEGGFAFVYEAQDLGSGREYALKRLLSNEEEKNRAIIQ-- 102  

                   rsEiqilkrL.sHpNIvrlidvfed........kdhlylVlEycegGLrl
                     E++ lk+L++HpNIv++  +   ++++++++  +  l +E+c g  +l
   mKIAA4080   103 --EVCFLKKLsGHPNIVQFCSAASIgkeesdtgQAEFLLLTELCKG--QL 148  

                   ldLfdylsetrrkgpllfsedeakkialQilrgleYLHsn..giiHRDLK
                    +   ++     kgpl  s d + ki++Q++r+++++H++++ iiHRDLK
   mKIAA4080   149 VEFLKRVE---CKGPL--SCDSILKIFYQTCRAVQHMHRQkpPIIHRDLK 193  

                   PeNILldengvvdaflKiaDFGlAkkls.......t.sss.lttfvGTpw
                    eN+Ll+++g++    K++DFG+A  +s+ ++ +    ++ +     T++
   mKIAA4080   194 VENLLLSNQGTI----KLCDFGSATTIShypdyswSaQKRaMVEEEITRN 239  

                   ....YmAPEvll..ggngygtkvDvWSlGvilyelltGkpPFsgevqdsl
                   +++ Y+ PE++   ++ ++g k D+W+lG+ily l++++ PF +      
   mKIAA4080   240 ttpmYRTPEIVDlySNFPIGEKQDIWALGCILYLLCFRQHPFEDG----- 284  

                   dqlqlirkilgpplefdspewdsisrsefrrlpnlseeakdLikkcLnkD
                     l ++  + + p++  ++                   + dLi+ +L+++
   mKIAA4080   285 AKLRIVNGKYSIPVNDTRY-----------------TVFHDLIRAMLKVN 317  

                   PskRltaeeilqHPwf<-*
                   P++Rl+++e++    +   
   mKIAA4080   318 PEERLSIAEVVRQ--L    331  

Pkinase_Tyr: domain 1 of 1, from 58 to 331: score -11.1, E = 3.5e-11
                   *->lklgkkLGeGaFGeVykGtlkgsgegtkikVAVKtLkeigasseeie
                      l+  ++L eG F  Vy++       g + + A K L  ++  +e   
   mKIAA4080    58    LRVRRVLAEGGFAFVYEAQDL----GSGREYALKRL--LSNEEEK-- 96   

                   redFlrEAsiMkklGdHpNiVrLlGvct...kegePggpg.lyiVtEyme
                    ++ ++E+  +kkl  HpNiV++  + + +++e++  g ++ ++ tE+++
   mKIAA4080    97 NRAIIQEVCFLKKLSGHPNIVQFCSAASigkEESDT-GQAeFLLLTELCK 145  

                   gGdLldfLrkhregrpLtlkdLlsfalQiAkGMeYLeskn..fvHRDLAA
                   g  L +fL++   ++pL+    l++ +Q +++ ++ ++++++++HRDL  
   mKIAA4080   146 G-QLVEFLKRVECKGPLSCDSILKIFYQTCRAVQHMHRQKppIIHRDLKV 194  

                   RNcLVsenlvVKIsDFGLaRdi..ynd.....dyY.vrkkgggk.lPvkW
                    N L+s+++++K +DFG a +i++y+d + +     ++  + +++     
   mKIAA4080   195 ENLLLSNQGTIKLCDFGSATTIshYPDyswsaQKRaMVEEEITRnTTPMY 244  

                   mAPEslkygk...FtskSDVWSFGVlLWEiftlGeqPFYpgmsneevlel
                     PE    + + +  +k D+W+ G+ L+ ++ + + PF    + +  l  
   mKIAA4080   245 RTPEIVDLYSnfpIGEKQDIWALGCILY-LLCFRQHPF---EDGAK-LRI 289  

                   lyedGyRLprPenCPdelYdlMlqCWaedPedRPtFselverL<-*
                   +    y  p  +      +dl++   + +Pe+R + +e+v++L   
   mKIAA4080   290 V-NGKYSIPVNDTRYTVFHDLIRAMLKVNPEERLSIAEVVRQL    331  

DnaJ: domain 1 of 1, from 1249 to 1323: score 2.4, E = 0.015
                   *->dyYeiL..Gvpr........dAsdeeIKKAYRkLAlkyHPDKNpgdp
                      ++  +L +G +r ++ +  +  ++e++KK+YR+ +l +HPDK  g p
   mKIAA4080  1249    TLHTVLwdGESRwtpvsmadLVTPEQVKKQYRRAVLVVHPDKATGQP 1295 

                   eerktleraeskeeAeekFkeineAYevLsDpekRaiYDqyg<-*
                         e       A   F+e+n A++   +   R ++       
   mKIAA4080  1296 -----YEQY-----AKMIFMELNDAWSEFENQGSRPLF----    1323 

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