hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03390/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4079  ( 366 res)   mpj03390

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Syndecan Syndecan domain                                591.7   4.6e-174   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Syndecan   1/1      58   364 ..     1   438 []   591.7 4.6e-174

Alignments of top-scoring domains:
Syndecan: domain 1 of 1, from 58 to 364: score 591.7, E = 4.6e-174
                   *->rkllwlalllllLslqsalpQiwaanyRLnterPvDlegSGDDdsFd
                      r++lwl+l++l+L+lq+alpQi+a+n     ++P+D++gSGDD+   
   mKIAA4079    58    RAALWLWLCALALRLQPALPQIVAVN-----VPPEDQDGSGDDS--- 96   

                   DdeLDDnySGSGssGyfEqeEtgsdqapsrlkDvelltptptapkPvTlv
                        Dn+SGSG +G++++  t+s+q+ps++kDv+llt+tptap+P    
   mKIAA4079    97 -----DNFSGSG-TGALPD--TLSRQTPSTWKDVWLLTATPTAPEP---- 134  

                   QPvdtPfEeflsedtrPeqaTsvpkvTkvsevneegSwkqttasTtssth
                                                               T+s+t+
   mKIAA4079   135 --------------------------------------------TSSNTE 140  

                   aattsvevhhsTlPagaatteatttehptihatvatvrtTsvqrllPpvV
                   +a+ts      +lPag++++e                        ++pv+
   mKIAA4079   141 TAFTS------VLPAGEKPEE------------------------GEPVL 160  

                   tvsatpsaTakdtHHHHekeaTTvpttttqlptphqvststakPtslqkp
                   +v+a+p++Ta+d+    eke+TT+p++t qlp+++++st  ++ t++q+ 
   mKIAA4079   161 HVEAEPGFTARDK----EKEVTTRPRETVQLPITQRAST--VRVTTAQAA 204  

                   itshHehedtepgthetstptapgqaevstvnhpgrletggdsttevpas
                   +tsh +h+ ++pg+hets+ptapgq+++++++    +e gg+s+++++++
   mKIAA4079   205 VTSH-PHGGMQPGLHETSAPTAPGQPDHQPPR----VEGGGTSVIKEVVE 249  

                   dgLvDLtpSgdlEiqeeDviPqpEestepdltnEtsaentaaaapeplqr
                   dg     ++++l+++        E+s+e+d+t+Ets+enta+aa+ep  r
   mKIAA4079   250 DG-----TANQLPAG--------EGSGEQDFTFETSGENTAVAAVEPGLR 286  

                   gqpPdiGLIDNtVdsGaSaAqlsqkniLeRKEVLaAVIaGGvVGliFAvf
                   +qpP        Vd+Ga++A++s   +L+RKEVL++VIaGG+VGliFAv+
   mKIAA4079   287 NQPP--------VDEGATGASQS---LLDRKEVLGGVIAGGLVGLIFAVC 325  

                   LVgfllYRMKKKDEGSYsLEEPKQAngYgsYQKPtkqTeEF<-*
                   LV+f+lYRMKKKDEGSYsLEEPKQAng g+YQKPtkq eEF   
   mKIAA4079   326 LVAFMLYRMKKKDEGSYSLEEPKQANG-GAYQKPTKQ-EEF    364  

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