hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01667/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4076  ( 605 res)   mbh01667

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAP2     PAP2 superfamily                                79.4    7.4e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PAP2       1/1      20   173 ..     1   176 []    79.4  7.4e-20

Alignments of top-scoring domains:
PAP2: domain 1 of 1, from 20 to 173: score 79.4, E = 7.4e-20
                   *->aalallfalvasallnglaylKllfgrpRAPhflavcqpdwgd..st
                        ++++f+l+a+al++++  ++l++g+   P+fl vc+p     + +
   mKIAA4076    20    SSGVHVFGLCATALVTDV--IQLATGYHT-PFFLTVCKPNYTLlgTS 63   

                   csdlwyeelyglefycmagspgldrid.lfgsvlltsafalvseggpSFP
                   c+                       ++   ++++ + +++ +  ++++FP
   mKIAA4076    64 CES----------------------NPyITQDICSGHDTHAILSARKTFP 91   

                   SGHaafaaaaalflalylprrlstls.rllrlllgllllllallvglSRv
                   S Ha+++a+aa++++ y+ +   + +++ll+++l++++++ a ++gl+ +
   mKIAA4076    92 SQHATLSAFAAVYVSMYFNA-VISDTtKLLKPILVFAFAIAAGVCGLTQI 140  

                   ylgvHypsDVlaGallGaliallvllfvrrlld<-*
                     +  +p+DV aG+l+Ga+ia++ ++   ++++   
   mKIAA4076   141 TQYRSHPVDVYAGFLIGAGIAAYLACHAVGNFQ    173  

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