hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09037/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4075  ( 1945 res)   mbg09037

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
DEXDc    DEAD-like helicases superfamily, catalytic d   138.8    5.6e-37   1
CHROMO   Chromatin organization modifier domain         122.6    4.3e-32   2
PHD      PHD zinc finger                                121.9    7.2e-32   2
HELICc   helicase superfamily c-terminal domain         104.0    1.7e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/2     393   436 ..     1    39 []    64.6  1.3e-14
PHD        2/2     472   515 ..     1    39 []    65.3  7.8e-15
CHROMO     1/2     520   600 ..     1    63 []    71.1  1.3e-16
CHROMO     2/2     641   698 ..     1    63 []    53.2  3.4e-11
DEXDc      1/1     743   955 ..     1   219 []   138.8  5.6e-37
HELICc     1/1    1101  1185 ..     1    86 []   104.0  1.7e-26

Alignments of top-scoring domains:
PHD: domain 1 of 2, from 393 to 436: score 64.6, E = 1.3e-14
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      yC+vC+++g++++Cd +C+r+yH+ Cl+p++e++p+g+w Cp+C   
   mKIAA4075   393    YCeVCQQgGeIILCD-TCPRAYHMvCLDPDMEkAPEGkWSCPHCE   436  

                   *
                    
   mKIAA4075     -   -    

PHD: domain 2 of 2, from 472 to 515: score 65.3, E = 7.8e-15
                   *->yC.vCgk.g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<-
                      +C+vC+++g+ll+Cd +C+ +yH++Cl+ppl+++p+g+w+CprC+  
   mKIAA4075   472    FCrVCKDgGeLLCCD-TCPSSYHIhCLNPPLPeIPNGeWLCPRCT   515  

                   *
                    
   mKIAA4075     -   -    

CHROMO: domain 1 of 2, from 520 to 600: score 71.1, E = 1.3e-16
                   *->eyeivEkIldhrw........................ekkkgeveYL
                      + + v+kIl ++w++++++++ +++++ +++++++++ +++ e++++
   mKIAA4075   520    KGK-VQKILIWKWgqppsptpvprppdadpntpspkpLEGRPERQFF 565  

                   VKWkGysysedtWEpeenleemLkkkncekkldeykkrek<-*
                   VKW+G+sy++++W++e +le      +c+ +  +y+++++   
   mKIAA4075   566 VKWQGMSYWHCSWVSELQLE-----LHCQVMFRNYQRKND    600  

CHROMO: domain 2 of 2, from 641 to 698: score 53.2, E = 3.4e-11
                   *->eyeivEkIldhrwekkkgeveYLVKWkGysysedtWEpeenleemLk
                      e++++++Il+h   +kkg v+YL+KW++++y++++WE+e+  ++   
   mKIAA4075   641    EWMMIHRILNHS-VDKKGHVHYLIKWRDLPYDQASWESEDVEIQ--- 683  

                   kkncekkldeykkrek<-*
                     ++  k  ++  re    
   mKIAA4075   684 -DYDLFKQSYWNHREL    698  

DEXDc: domain 1 of 1, from 743 to 955: score 138.8, E = 5.6e-37
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      ++++l pyQ+e+++wl+    ++ d+ila+++G+GKT++ + +l  l
   mKIAA4075   743    TGgTLHPYQMEGLNWLRFSwaqgTDTILADEMGLGKTVQTAVFLYSL 789  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgv.yfv...
                    k+g+        ++++Lv +P  + +++w++e++ ++p+++v  +v+++
   mKIAA4075   790 YKEGH-------SKGPFLVSAP-LSTIINWEREFEMWAPDMYVvTYVgdk 831  

                   ..........evlkvvglygG.sktkekeqlrklksgktdilvtTpgrLl
                   +++   ++++  ++  ++ gG++      +++k +s k+++l+t+++ + 
   mKIAA4075   832 dsraiireneFSFEDNAIRGGkK----ASRMKKEASVKFHVLLTSYELIT 877  

                   dll.ngkglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpkn
                    ++     l   ++ ++i+DEaHrl++++s    +f ++l+++       
   mKIAA4075   878 IDMaI---LGSiDWACLIVDEAHRLKNNQS----KFFRVLNgYSL----- 915  

                   rqrlllSATppeienllklflnlpelfpnpvfisvgf...tlepieqf<-
                    ++lll++Tp  ++n+l+++++      ++ f+++++ ++   ++e+f  
   mKIAA4075   916 QHKLLLTGTP--LQNNLEELFH------LLNFLTPERfhnLEGFLEEF   955  

                   *
                    
   mKIAA4075     -   -    

HELICc: domain 1 of 1, from 1101 to 1185: score 104.0, E = 1.7e-26
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki...kv
                      d l+++L+++    g+k+ r++Gg++ ++R+e++++F++   ++ ++
   mKIAA4075  1101    DLLEDFLEHE----GYKYERIDGGITGNMRQEAIDRFNAPGAqqfCF 1143 

                   LvaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   L++T+++++G+++  +d+VI+yd +w+p ++iQ+  Ra+R+G   
   mKIAA4075  1144 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIG    1185 

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