hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg09037/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4075 ( 1945 res) mbg09037 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CHDCT2 CHDCT2 (NUC038) domain 441.9 5.7e-129 1 SNF2_N SNF2 family N-terminal domain 354.1 1.5e-102 1 DUF1086 Domain of Unknown Function (DUF1086) 343.8 1.9e-99 1 PHD PHD-finger 142.2 9.5e-39 2 CHDNT CHDNT (NUC034) domain 134.8 1.5e-36 1 DUF1087 Domain of Unknown Function (DUF1087) 116.5 4.9e-31 1 Helicase_C Helicase conserved C-terminal domain 102.2 9.9e-27 1 Chromo 'chromo' (CHRromatin Organisation MOdifier 58.0 2.1e-13 2 ResIII Type III restriction enzyme, res subunit 11.8 2.3e-05 1 DEAD DEAD/DEAH box helicase -31.0 0.08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CHDNT 1/1 184 238 .. 1 55 [] 134.8 1.5e-36 PHD 1/2 393 438 .. 1 51 [] 74.9 1.7e-18 PHD 2/2 472 517 .. 1 51 [] 75.3 1.3e-18 Chromo 1/2 551 598 .. 1 68 [] 4.2 2 Chromo 2/2 643 695 .. 1 68 [] 56.3 6.6e-13 ResIII 1/1 745 927 .. 1 244 [] 11.8 2.3e-05 DEAD 1/1 747 933 .. 1 266 [] -31.0 0.08 SNF2_N 1/1 750 1046 .. 1 356 [] 354.1 1.5e-102 Helicase_C 1/1 1106 1185 .. 1 76 [] 102.2 9.9e-27 DUF1087 1/1 1309 1374 .. 1 67 [] 116.5 4.9e-31 DUF1086 1/1 1387 1544 .. 1 168 [] 343.8 1.9e-99 CHDCT2 1/1 1757 1929 .. 1 180 [] 441.9 5.7e-129 Alignments of top-scoring domains: CHDNT: domain 1 of 1, from 184 to 238: score 134.8, E = 1.5e-36 *->VeieYsEEefqsLtnyKaFssfvrPlilkeNPkiavsKmmmllaaKw +++++sEE++++LtnyKaFs+fvrPli+++NPkiavsKmmm+l+aKw mKIAA4075 184 IDHVFSEEDYRTLTNYKAFSQFVRPLIAAKNPKIAVSKMMMVLGAKW 230 rEFqdhnp<-* rEF+++np mKIAA4075 231 REFSTNNP 238 PHD: domain 1 of 2, from 393 to 438: score 74.9, E = 1.7e-18 *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe yC vC++ gg++++CD+C+r++H+ Cl+p++e pegkW Cp+ mKIAA4075 393 YCEVCQQ-----GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPH 434 Ctpk<-* C + mKIAA4075 435 CEKE 438 PHD: domain 2 of 2, from 472 to 517: score 75.3, E = 1.3e-18 *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe +C+vC++ gg+ll+CD+C+ ++H+ Cl+ppl+e+p+g+WlCp+ mKIAA4075 472 FCRVCKD-----GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPR 513 Ctpk<-* Ct+ mKIAA4075 514 CTCP 517 Chromo: domain 1 of 2, from 551 to 598: score 4.2, E = 2 *->yeVErILdhrlrkggkksvplrekpktgleYLVKWkGypyeenTWEp + + + ++ + +++VKW+G +y +++W + mKIAA4075 551 PSPKPLEGRP----ER-------------QFFVKWQGMSYWHCSWVS 580 eenLkacrgfpelKieefeqr<-* e L+ + + + + +++ + mKIAA4075 581 ELQLELH--CQVM-FRNYQRK 598 Chromo: domain 2 of 2, from 643 to 695: score 56.3, E = 6.6e-13 *->yeVErILdhrlrkggkksvplrekpktgleYLVKWkGypyeenTWEp + ++rIL+h+++k+g+ +YL+KW+++py++++WE+ mKIAA4075 643 MMIHRILNHSVDKKGHV------------HYLIKWRDLPYDQASWES 677 ee.nLkacrgfpelKieefeqr<-* e+ ++++ + + ++++ mKIAA4075 678 EDvEIQDY---DLF-KQSYWNH 695 ResIII: domain 1 of 1, from 745 to 927: score 11.8, E = 2.3e-05 *->iklRpyQeeAierllesiekgelrlatglkdkdkkkrglivmATGsG +l+pyQ+e ++ l+ s+ +g + +++ G G mKIAA4075 745 GTLHPYQMEGLNWLRFSWAQG--------------TDTILADEMGLG 777 KTltaakiliarllkkqq.klkhgriddskvLFlVprkdLleQaleeFtk KT+ a + + l+k++++k+ ++L+ +p +++ +++eF+ mKIAA4075 778 KTVQTAV-FLYSLYKEGHsKG--------PFLVSAPLSTIIN-WEREFEM 817 feskkkkefknpgvdkklkvltdnqkdsalegkskkndieiifttiQkLs +++++ + +++dk+ + ++ + + s mKIAA4075 818 WAPDMYVV--TYVGDKDSRAIIRENEFSFE-------------------D 846 kalklgkendeeekskstesvvglrlavesleflldefd........... +a+++gk++++++k++s +++ll + + + ++ mKIAA4075 847 NAIRGGKKASRMKKEASVK-----------FHVLLTSYElitidmailgs 885 ....liIiDEaHrssaktksakededatklevyrkilekwelelnkkyfk + ++I+DEaHr+ + ++ + ++l+ + ++ mKIAA4075 886 idwaCLIVDEAHRLKNNQSK------------FFRVLN--------G-YS 914 paflLGlTATPer<-* +++L lT+TP mKIAA4075 915 LQHKLLLTGTPLQ 927 DEAD: domain 1 of 1, from 747 to 933: score -31.0, E = 0.08 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxx *->ptpiQaeaipaileneGfal..redvlssggmdrlvlqApTGSGKTl + p+Q e ++ + f+ + d + + + + G GKT mKIAA4075 747 LHPYQMEGLNWLR----FSWaqGTDTI--------L-ADEMGLGKTV 780 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx afllPilygqrllkgpksarggksqgggknergfkidspqalvlaPTreL + + + ++g + + lv aP+ mKIAA4075 781 QTAVFLY--SLYKEGHSK--------------------GPFLVSAPLSTI 808 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx aeQiyeelkkllkilalsplgvnellrrigtglrvavlslyGGsslkdql ++ + +e++ +++ + + v+ + ++++ + + + ++ mKIAA4075 809 IN-WEREFEMWAP----DMYVVTYVGDKDSRAIIRENE--FSFEDNAIRG 851 RF xxx xxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx dkl.rgkres.kggpdIvvgTPgrLldllrngrinikievssertgklkl k ++ +++ + + +++ + ++ + + mKIAA4075 852 GKKaSRMKKEaSVKFHVLLTSYELITIDM-------------------AI 882 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx knlkhlkllVlDEahrlldmghgFgedleeilrrlprneplraqllgtil +++ +l++DEahrl ++ +F +l ++ mKIAA4075 883 LGSIDWACLIVDEAHRLKNNQSKFFRVLNG----------YS-------- 914 RF xxxxxxxxxxxxxxxxxxxxxxx HqkpniQtllfSATlpprevedl<-* + ll++ T+ +e+l mKIAA4075 915 -LQH---KLLLTGTPLQNNLEEL 933 SNF2_N: domain 1 of 1, from 750 to 1046: score 354.1, E = 1.5e-102 *->YQleGvnWLislyknlvkkendslglggILADEMGLGKTlQtIslla YQ eG+nWL + + + g ILADEMGLGKT+Qt +l mKIAA4075 750 YQMEGLNWLRFSWAQ---------GTDTILADEMGLGKTVQTAVFLY 787 ylkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgn l+ + gpfLv +PlSt+ nW++Efe wap d+ +v y+gd++ mKIAA4075 788 SLYKEGHSK----GPFLVSAPLSTIINWEREFEMWAP-DMYVVTYVGDKD 832 srdqi...............rkdellrnvlkdggrlkfdvlitsYeiirk sr++i++++ + +++ ++++k+ +++ +++ kf+vl+tsYe+i mKIAA4075 833 SRAIIrenefsfednairggKKASRMKKEASV----KFHVLLTSYELITI 878 NkLlkdkdeLkkleinwryvilDEGHHriKNedSklrkskalkklkhann d + L++ i+w +i+DE+ Hr+KN +Sk ++ l+ + ++ mKIAA4075 879 -----DMAILGS--IDWACLIVDEA-HRLKNNQSKF--FRVLNGYS-LQH 917 RLlLTGTPlQNnLkElwsLlnFlmPgiFgsleeyindgksFdkwfnnpia +LlLTGTPlQNnL+El+ LlnFl P +F++l + F ++f +ia mKIAA4075 918 KLLLTGTPLQNNLEELFHLLNFLTPERFHNL-------EGFLEEFA-DIA 959 eggdsavLadkteaLrreknveeglklinrLhkilkpflLRRlKkdveks ++ +i+ Lh++l p +LRRlK+dv k+ mKIAA4075 960 KED-----------------------QIKKLHDMLGPHMLRRLKADVFKN 986 LpppeKteyvlfcelsklQkelYkkflkgeskdvkaindserreggkekn p Kte+++++els +Qk++Yk++l +++++a+n++ gg mKIAA4075 987 MPS--KTELIVRVELSPMQKKYYKYIL---TRNFEALNARG---GGNQ-- 1026 egksrllnlimqLrKicNfHPyLf<-* +lln m L+K+cN HPyLf mKIAA4075 1027 ---VSLLNVVMDLKKCCN-HPYLF 1046 Helicase_C: domain 1 of 1, from 1106 to 1185: score 102.2, E = 9.9e-27 *->ll.epgikvarlhGglsqeeReeilekFrsgks...kvLvaTdvaar +l+ +g+k+ r++Gg++ + R+e++++F++ ++ ++L++T+++++ mKIAA4075 1106 FLeHEGYKYERIDGGITGNMRQEAIDRFNAPGAqqfCFLLSTRAGGL 1152 GlDipdvnlVInydlpwnpesyiQRiGRaGRaG<-* G+++ +++VI+yd +wnp ++iQ+ Ra+R+G mKIAA4075 1153 GINLATADTVIIYDSDWNPHNDIQAFSRAHRIG 1185 DUF1087: domain 1 of 1, from 1309 to 1374: score 116.5, E = 4.9e-31 *->leqllkecElaitesiilakenaepsYWekLLrasyEkqQeeelsqL +e+++ e+E++++e+i+++ e+ +p+YWekLLr++yE+qQe+++++L mKIAA4075 1309 REEEMGEEEEVEREIIKQE-ESVDPDYWEKLLRHHYEQQQEDLARNL 1354 GKRKRsRKQViYtEgttvee<-* GK+KR+RKQV+Y++g+++++ mKIAA4075 1355 GKGKRIRKQVNYNDGSQEDR 1374 DUF1086: domain 1 of 1, from 1387 to 1544: score 343.8, E = 1.9e-99 *->peaargLeeddeDyqrkprTvtRPYRkraRdnseekliPLmegeGry +++a+ ee+deD+++++++ +RP Rk+ R++++++l+PL++++G++ mKIAA4075 1387 YSVAS--EEGDEDFDERSEAPRRPSRKGLRNDKDKPLPPLLARVGGN 1431 leVLGFNetqRdiFlrtvMRyGmPPQdnfdskwlVrdLrnKsekefkrYg +eVLGFN++qR++Fl+++MRyGmPPQd+f+++wlVrdLr+Ksekefk+Y+ mKIAA4075 1432 IEVLGFNARQRKAFLNAIMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYV 1481 iLFLkHiaEnptDNsttFKVITAmVYaDGVPkEGlssdevLvritlmmLV +LF++H++E+++D+++tF aDGVP+EGls+++vL+ri++m+L+ mKIAA4075 1482 SLFMRHLCEPGADGAETF--------ADGVPREGLSRQHVLTRIGVMSLI 1523 keKvqflenhpgaPvfpeyvi<-* ++Kvq++e+++g++++pe+++ mKIAA4075 1524 RKKVQEFEHVNGRWSMPELAE 1544 CHDCT2: domain 1 of 1, from 1757 to 1929: score 441.9, E = 5.7e-129 *->GkEYEIWhRRHDYWLLAgvvvhGYGRyQiNFqDIiNDprFsivNEPF k YEIWhRRHDYWLLAg++ hGY R+Q DI+NDpr++i+NEPF mKIAA4075 1757 -KTYEIWHRRHDYWLLAGIINHGYARWQ----DIQNDPRYAILNEPF 1798 KevgaePaanfadiKnKFLaRRFKLlEQsLVIEEQLRRAAhlNkaqdPdq K +nf++iKnKFLaRRFKLlEQ+LVIEEQLRRAA+lN dP++ mKIAA4075 1799 KGEMNR--GNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSH 1846 PvgsLaqrFaelEnlAeshaniakESsaGNrnANAvLHKvLaQLdelLSD P + L+ rFae+E+lAesh++++kES aGN++ANAvLHKvL QL+elLSD mKIAA4075 1847 PSMALNTRFAEVECLAESHQHLSKESMAGNKPANAVLHKVLKQLEELLSD 1896 mKsDVsRLPaTlaqvapVteRLqMsERqILSRL<-* mK+DV RLPaT+a+++pV+ RLqMsER ILSRL mKIAA4075 1897 MKADVTRLPATIARIPPVAVRLQMSERNILSRL 1929 //