hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12253/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4074  ( 1099 res)   mfj12253

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.      36.6    3.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/1     753   819 ..     1    80 []    36.6  3.4e-06

Alignments of top-scoring domains:
PDZ: domain 1 of 1, from 753 to 819: score 36.6, E = 3.4e-06
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      g lGf +    f+++v++ + A+  G      L++G ++l+V G + 
   mKIAA4074   753    GRLGFEVDAEGFITHVERFTFAETTG------LRPGARLLRVCG-QT 792  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +  l  e a+++l++a+      kv +tvl+++   
   mKIAA4074   793 LPKLGPETAAQMLRSAP------KVCVTVLPPD    819  

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