hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj12253/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4074  ( 1099 res)   mfj12253

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Rap_GAP  Rap/ran-GAP                                    432.1   5.1e-126   1
PDZ      PDZ domain (Also known as DHR or GLGF)          59.9    5.4e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Rap_GAP    1/1     407   596 ..     1   192 []   432.1 5.1e-126
PDZ        1/1     744   816 ..     1    82 []    59.9  5.4e-14

Alignments of top-scoring domains:
Rap_GAP: domain 1 of 1, from 407 to 596: score 432.1, E = 5.1e-126
                   *->lysNeeaspaFdeFLtlLGqrvrLKdfepDkvYrGGLDvkgddTGth
                      +y+N+ea+ aF++FLtlLG++vrLK+fe+   Yr++LD+k+d+TGth
   mKIAA4074   407    MYNNQEAGAAFMQFLTLLGDVVRLKGFES---YRAQLDTKTDSTGTH 450  

                   svYttykdmeimFHVSTlLPytesdkqqLqrKRHIGNDiVtIVFqesGek
                   s+Ytty+d+eimFHVST+LPyt++++qqL+rKRHIGNDiVtIVFqe+G+k
   mKIAA4074   451 SLYTTYQDHEIMFHVSTMLPYTPNNQQQLLRKRHIGNDIVTIVFQEPGSK 500  

                   pFspdtIrShFqhVfviVraldpetehvtYkVsvtrrkDvpafgptlpkg
                   pF+p+tIrShFqhVf++Vra+ p+t+h+ Y+V+v+r++D+pafgp+lp+g
   mKIAA4074   501 PFCPTTIRSHFQHVFLVVRAHAPCTPHTSYRVAVSRTQDTPAFGPALPEG 550  

                   .avfdknaeFreflLakliNaenavhkarkFaklatrtRqklLadL<-*
                   +++f++na+Fr+flLak++N+e+a+++ar+F+++atrtRq++L+dL   
   mKIAA4074   551 gGPFAANADFRAFLLAKALNGEQAAGHARQFHAMATRTRQQYLQDL    596  

PDZ: domain 1 of 1, from 744 to 816: score 59.9, E = 5.4e-14
                   *->evtlekevkrgglGfsikggsdkgivvsevlpGsgaAeagGrLkeGD
                      e+ l+++ ++g+lGf++      + ++++v ++   Ae  G L++G 
   mKIAA4074   744    ELALPRD-GQGRLGFEVDA----EGFITHVERF-TFAETTG-LRPGA 783  

                   qIlsvNGqdvenlsheravlalkgsggsevtLtil<-*
                   ++l v+Gq + +l  e+a+++l++++  +v++t+l   
   mKIAA4074   784 RLLRVCGQTLPKLGPETAAQMLRSAP--KVCVTVL    816  

//