hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh01340/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4073  ( 797 res)   mbh01340

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
Pecanex_C Pecanex protein (C-terminus)                  539.8   1.9e-158   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
Pecanex_C   1/1     334   566 ..     1   238 []   539.8 1.9e-158

Alignments of top-scoring domains:
Pecanex_C: domain 1 of 1, from 334 to 566: score 539.8, E = 1.9e-158
                   *->eeiakvkvdKdfdvelVtlCyalsLlgrrsLatasghilssavEsFl
                      +      vd d  ++lVtlC++l++lgrr+L+tas h++s+ +E Fl
   mKIAA4073   334    RS---QPVDQDWNSPLVTLCFGLCVLGRRALGTAS-HSMSASLEPFL 376  

                   YGLHaLFKGdfrItSvrdeWvfadmeLlrqvvlpAvrmaLKLhqDhftlp
                   YGLHaLFKGdfrItS+rdeWvfadm+Ll++vv+p+vrmaLKLhqDhft+p
   mKIAA4073   377 YGLHALFKGDFRITSPRDEWVFADMDLLHRVVAPGVRMALKLHQDHFTSP 426  

                   defddpreLykaieeyerdlvIshesDpkWrsAiLankPsLlaLrhvmdd
                   de+++p +Ly+ai   e+ lvIshe+Dp+WrsAiL n+PsLlaLrhvmdd
   mKIAA4073   427 DEYEEPAALYDAIAANEERLVISHEGDPAWRSAILSNTPSLLALRHVMDD 476  

                   GideyriimLneryLsirViKLNrEcVRglWAgqqqELiylrNrnpERgS
                    +dey+iimLn+r+Ls+rViK+NrEcVRglWAgqqqEL++lrNrnpERgS
   mKIAA4073   477 ASDEYKIIMLNRRHLSFRVIKVNRECVRGLWAGQQQELVFLRNRNPERGS 526  

                   IQnakqlLRNlinssadqPiGYPIYvSkPLTTSyadshiqL<-*
                   IQnakq+LRN+inss+dqP+GYPIYvS PLTTS a sh qL   
   mKIAA4073   527 IQNAKQALRNMINSSCDQPLGYPIYVS-PLTTSLAGSHPQL    566  

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