hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg15453/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4072  ( 390 res)   mbg15453

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-CCCH  Zinc finger C-x8-C-x5-C-x3-H type (and simil    38.8    1.2e-07   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-CCCH    1/4      25    51 ..     1    27 []    20.5    0.017
zf-CCCH    2/4      59    83 ..     1    27 []     2.7      3.8
zf-CCCH    3/4     188   214 ..     1    27 []    24.1   0.0033
zf-CCCH    4/4     224   248 ..     1    27 []     7.4     0.91

Alignments of top-scoring domains:
zf-CCCH: domain 1 of 4, from 25 to 51: score 20.5, E = 0.017
                   *->yktelCrffsrtGtCkyGd.rCkFaHge<-*
                         e Cr ++r GtC++ d+ CkFaH++   
   mKIAA4072    25    LTLEVCRQYQR-GTCSRSDeECKFAHPP    51   

zf-CCCH: domain 2 of 4, from 59 to 83: score 2.7, E = 3.8
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                       +   C + ++ G+C++ ++Ck+ H++   
   mKIAA4072    59    GRVIACFDSLK-GRCSR-ENCKYLHPP    83   

zf-CCCH: domain 3 of 4, from 188 to 214: score 24.1, E = 0.0033
                   *->yktelCrffsrtGtCkyGdr.CkFaHge<-*
                       k e Cr f+r G C +G+++C+FaH+    
   mKIAA4072   188    DKLEVCREFQR-GNCARGETdCRFAHPA    214  

zf-CCCH: domain 4 of 4, from 224 to 248: score 7.4, E = 0.91
                   *->yktelCrffsrtGtCkyGdrCkFaHge<-*
                           C+++ + G+C + ++Ck+ H++   
   mKIAA4072   224    NTVTVCMDYIK-GRCMR-EKCKYFHPP    248  

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