hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mej/mej01380/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4069 ( 952 res) mej01380 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase 356.2 3.6e-103 1 FAT FAT domain 249.1 6e-71 1 FATC FATC domain 70.3 4e-17 1 Mad3_BUB1_I Mad3/BUB1 homology region 1 -51.4 0.18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Mad3_BUB1_I 1/1 187 291 .. 1 133 [] -51.4 0.18 FAT 1/1 82 405 .. 1 546 [] 249.1 6e-71 PI3_PI4_kinase 1/1 629 875 .. 1 329 [] 356.2 3.6e-103 FATC 1/1 920 952 .] 1 33 [] 70.3 4e-17 Alignments of top-scoring domains: Mad3_BUB1_I: domain 1 of 1, from 187 to 291: score -51.4, E = 0.18 *->leqvrqafEeeiqeyeeegdDPLdlWlrYIkWteeayPqggggkqsg +++ ++ ++++ + ++y k+ mKIAA4069 187 CNEDSLNWGARLEMTQ------------------NSYRA----KEPI 211 LltlLERCvkyFedderYkNDpRyL.KiWLkYielfsnsldeprdiFqyL L L R++ ++ + Y + +++ +WL+ ++ ++++ ++ L mKIAA4069 212 L--ALRRALLSLNKRPDYNE---MVgECWLQSARVAR-KAGHHQTAYNAL 255 yskgIGtklAlfYeewAslLEsrgkfkkAdevfqlGi<-* ++ g ++lA +Y e A++L s+g++ +A v+q+G+ mKIAA4069 256 LNAG-ESRLAELYVERAKWLWSKGDVHQALIVLQKGV 291 FAT: domain 1 of 1, from 82 to 405: score 249.1, E = 6e-71 *->aplaaeAAWrlgqWddmdlmleylsamklkLLLqGedqSLLtfiddt +++ +eAAW l+qW dl+++yl a mKIAA4069 82 NTYRVEAAWKLSQW---DLVENYLAADG------------------- 106 pdreFfkAiLalHksqelsfliilgdlllalkkgeekefdealryidiyr ++++++++lg+lll++kk++ f++ l++++ mKIAA4069 107 ---------------KSTTWSVRLGQLLLSAKKRDTTTFYDTLKLVR--- 138 eardlldteLsalpgk.eSynraYdvlvrlQmLaELeEAsIyaLsTniin + + +Lsa + ++ Sy+r Y+++vrl+mL+ELe+ + mKIAA4069 139 ---AEQIVPLSAASFErGSYQRGYEFIVRLHMLCELEH--------SLKP 177 ykskpgelaslaelrLhdmkrllktWrrRLpgvkqddvevWqriLavRrv ++ k+ ++ + + +W +RL+++ q +++ +++iLa+Rr+ mKIAA4069 178 LFRKSPGDSC---------NEDSLNWGARLEMT-QNSYRAKEPILALRRA 217 alslieekLttqngvtsmvdersSqhaplrdpansrlfsIkelLtkSnsv lsl mKIAA4069 218 LLSL---------------------------------------------- 221 lsrslvlgphedaetwlkfArlcRnadalkeiqleksgLWdkrlslAeka + + ++ e+wl++Ar++R k+g ++++A++a mKIAA4069 222 --NKRPDYNEMVGECWLQSARVAR-----------KAG----HHQTAYNA 254 LlkllgldnslpedplprlspsvvyaylKllwqegchrkaiqelqnyleV Ll++ ++ ++ +++K+lw++g+ ++a ++lq + e mKIAA4069 255 LLNAGESRL-----------AELYVERAKWLWSKGDVHQALIVLQKGVE- 292 ealtnlqyftselsaelftlkgmfleqlv.lsdeklqkaeeaktlqqill l + ++ ++++s ++ +g + ++ +++++e + + +a mKIAA4069 293 --LCFPENKSPSESKHMLI-HGRATLLVGrFMEETANFESNA-------- 331 gttysimanalLlARCyLklGeWqkalrqdswnesidgilqsfaeAteld +++++++ t ++ mKIAA4069 332 --------------------------------------VMKKYKDVTLFL 343 pkwykaWhtWAlhnfEvvshyeqeeqQlakiqeasdsaldaqmtsvtskd p+w+++++++A++++ mKIAA4069 344 PEWEDGHFYLAKYYD----------------------------------- 358 qqslkldesaslseseeigeyvvpAvegylrSlslsskeslqdtlRLLtL kl+++ ++ +e +g++++++v ++ rSl+++++ ++q+++R+L+L mKIAA4069 359 ----KLMPMVTDNKMEKQGDLIRYIVLHFGRSLQYGNQFIYQSMPRMLSL 404 W<-* W mKIAA4069 405 W 405 PI3_PI4_kinase: domain 1 of 1, from 629 to 875: score 356.2, E = 3.6e-103 *->gypfifKgGdDLrsrQDelvlQligVfKPkDEEPyApnNPkgtkvsq y +++K +dDLr +D++++++ mKIAA4069 629 FYIMMCKPKDDLR--KDCRLMEFN----------------------- 650 GerlmnkllkgegldrrRnlqltaYlviplgpgsGlIEwvpnsttlaeil +l nk l++++++rrR+l++++Y vipl++++G+IEwv+n+ +l++il mKIAA4069 651 --SLINKSLRKDAESRRRELHIRTYAVIPLNDECGIIEWVNNTAGLRPIL 698 rtymvkksikpfnksrffkdkkttkkleknakllkehkllqmvldrkqlt + +++k+ + k +l++++ +k+++ mKIAA4069 699 TKIYKEKGVYMTGK------------------------ELRQCMLPKSAA 724 llekvevFeeklsntpkpgllqwFvkknpdaapyeewfeRfardnfvrSc l ek++vF e l+++++p++++wF+ +pd+ w + +r+ ++rS mKIAA4069 725 LSEKLKVFQELLLPRHPPVFHEWFLRTFPDP---TSWYS--SRSAYCRST 769 AgmsvldYiLGigDRHldNiLvkkndkktGklfHIDFGlcfghvkgkrgp A+ms+++YiLG+gDRH++NiL+ d tG+++H+DF++ f+ kg++++ mKIAA4069 770 AVMSMVGYILGLGDRHGENILF---DSFTGECVHVDFNCLFN--KGETFE 814 kpervPFrLTrWPQaklpmveamggyiasLgpsgdeglFrelceeayral +pe vPFrLT+ +mv++m gp+g+eglFr+ ce ++r++ mKIAA4069 815 VPEIVPFRLTH------NMVNGM-------GPMGTEGLFRRACEVTLRLM 851 RrnanlllnlLkqkAvarGelmledglpdwrs<-* R + + l+++L ++l+d+l++w++ mKIAA4069 852 RDQREPLMSVL--------KTFLHDPLVEWSK 875 FATC: domain 1 of 1, from 920 to 952: score 70.3, E = 4e-17 *->epLsvegqvedLIqqATspenLsqmYiGWcPfl<-* +pLs+eg+v++LIq+AT+++ L+qmY+GW+P++ mKIAA4069 920 LPLSIEGHVHYLIQEATDENLLCQMYLGWTPYM 952 //