hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mph/mph02290/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4068 ( 129 res) mph02290 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PX PhoX homologous domain, present in p47phox a 47.5 1.8e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PX 1/1 29 129 .] 1 142 [] 47.5 1.8e-09 Alignments of top-scoring domains: PX: domain 1 of 1, from 29 to 129: score 47.5, E = 1.8e-09 *->dniaivavveeetsgkkrgdgkhyyyvieietstnedveewtvyRRY ++i +v+v++ + k+r ++khy+y+i++++s++ + +yRRY mKIAA4068 29 RSIVEVKVLDVQ---KRRVPNKHYVYIIRVTWSSG---ATEAIYRRY 69 sdFleLhskLlkkfpqek.....rrriiPplPekkllgryreraekesmk s F++L++++l kfp+e +++++++riiP lP+k l++r+ mKIAA4068 70 SKFFDLQMQMLDKFPMEGgqkdpKQRIIPFLPGKILFRRS---------- 109 vkkslnnfseefiekRrrgLerYLqkllnhPelinhyrvsevvleFLess + ++++ kR + +++Y++ ++ mKIAA4068 110 -------HIRDVAVKRLIPIDEYCK--------VS--------------- 129 <-* mKIAA4068 - - //