hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03374/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4065  ( 779 res)   mpj03374

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET (Su(var)3-9, Enhancer-of-zeste, Trithora   141.8    7.3e-38   1
SANT     SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding d    42.3    6.3e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SANT       1/2     192   283 ..     1    53 []    24.3    0.017
SANT       2/2     461   509 ..     1    53 []    17.9      1.1
SET        1/1     645   766 ..     1   114 []   141.8  7.3e-38

Alignments of top-scoring domains:
SANT: domain 1 of 2, from 192 to 283: score 24.3, E = 0.017
                   *->kkgeWteeEdelLleavkkyGkg........................
                        +e     de+++e+v+ +G+ +++++++++++++++++++++ ++
   mKIAA4065   192    GDRECGFINDEIFVELVNALGQYndddddddgddpdereekqkdled 238  

                   ..............tdndWakIakelp.gRtpkqcrerwrnllkp<-*
                   +++++++ ++++ + d+ +++I++++p++ t+++++e++++l +    
   mKIAA4065   239 nrddketcpprkfpADKIFEAISSMFPdKGTAEELKEKYKELTEQ    283  

SANT: domain 2 of 2, from 461 to 509: score 17.9, E = 1.1
                   *->kkgeWteeEdelLleavkkyGkgtdndWakIakelpgRtpkqcrerw
                      +  eW+  E  +++ ++ +y     +++++Ia+ ++++t+ q+ e+ 
   mKIAA4065   461    ENVEWSGAEASMFRVLIGTYY----DNFCAIARLIGTKTCRQVYEFR 503  

                   rnllkp<-*
                    +  +    
   mKIAA4065   504 VKESSI    509  

SET: domain 1 of 1, from 645 to 766: score 141.8, E = 7.3e-38
                   *->aklevfkskgkGwGlratedIpkGefIleyvGeii............
                      ++l +++s+ +GwG++ +++  k+efI ey+Geii++++ +++++  
   mKIAA4065   645    KHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIIsqdeadrrgkvy 691  

                   .....fylfd.....ciDatranggkGniarfiNHSCePNcelifvevdg
                   ++   ++lf+ +++ ++Datr    kGn++rf NHS +PNc++++++v+g
   mKIAA4065   692 dkymcSFLFNlnndfVVDATR----KGNKIRFANHSVNPNCYAKVMMVNG 737  

                   fdprgasdsadprivifAlrdIkpGEELtidYgddyege<-*
                             d+ri+ifA+r I  GEEL++dY ++  ++   
   mKIAA4065   738 ----------DHRIGIFAKRAIQTGEELFFDYRYSQADA    766  

//