hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mpj/mpj03374/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4065  ( 779 res)   mpj03374

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SET      SET domain                                     187.3    2.5e-52   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SET        1/1     639   766 ..     1   261 []   187.3  2.5e-52

Alignments of top-scoring domains:
SET: domain 1 of 1, from 639 to 766: score 187.3, E = 2.5e-52
                   *->vqkgrwarlegfktegkGwGlratedIpkGefiiEYpGelitseeae
                       q+g +++l ++ ++++GwG++ +++++k+efi EY+Ge+i+++ea+
   mKIAA4065   639    IQRGSKKHLLLAPSDVAGWGIFIKDPVQKNEFISEYCGEIISQDEAD 685  

                   kreddllgpkyydddgdksldeYlfdldalfLlrEkleSWkpYiiLPtys
                   +r+      k yd++++     +lf+l++                     
   mKIAA4065   686 RRG------KVYDKYMCS----FLFNLNN--------------------- 704  

                   PlfWseeeleLkGTqllevdkeeleeydllaeeievflqhklFpdveeef
                                                                     
   mKIAA4065     - -------------------------------------------------- -    

                   sfedflWaasivsSRafslvegvnreeensegslelviDAtrkGNiaRFi
                                                     ++v+DAtrkGN +RF 
   mKIAA4065   705 ----------------------------------DFVVDATRKGNKIRFA 720  

                   NHSCePNcevqvvfvdgedlgdsdvtDeaglepgdprivlfAlrdIpaGe
                   NHS +PNc+++v++v+                 gd+ri++fA+r I+ Ge
   mKIAA4065   721 NHSVNPNCYAKVMMVN-----------------GDHRIGIFAKRAIQTGE 753  

                   ELtydYgydksnge<-*
                   EL++dY  ++  +    
   mKIAA4065   754 ELFFDYR-YSQADA    766  

//