hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj15040/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4063  ( 968 res)   mfj15040

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
ARM      Armadillo/beta-catenin-like repeats            134.4    1.2e-35   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ARM        1/6     397   437 ..     1    38 []    38.1  1.2e-06
ARM        2/6     440   481 ..     1    38 []    48.5  8.7e-10
ARM        3/6     542   588 ..     1    38 []     8.8       37
ARM        4/6     658   699 ..     1    38 []     3.7  1.7e+02
ARM        5/6     705   745 ..     1    38 []    31.6  0.00011
ARM        6/6     796   838 ..     1    38 []    15.3      5.4

Alignments of top-scoring domains:
ARM: domain 1 of 6, from 397 to 437: score 38.1, E = 1.2e-06
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                      n+  k  v+++ glp+Lv LL+++ +ev++ A++aL+Nl++   
   mKIAA4063   397    NEGIKRRVRQLRGLPLLVALLdhpRAEVRRRACGALRNLSY    437  

ARM: domain 2 of 6, from 440 to 481: score 48.5, E = 8.7e-10
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      + +nk+a++d+Gg+paLv+LL+  +d ev++ ++++L+Nl+s   
   mKIAA4063   440    DTDNKAAIRDCGGVPALVRLLraarDNEVRELVTGTLWNLSS    481  

ARM: domain 3 of 6, from 542 to 588: score 8.8, E = 37
                   *->ndenkqavvdaGglpaLvqLL.........deevqkeAawaLsNlas
                       +  +    ++G ++aL++ L++  +++++d + ++++++  +Nl++
   mKIAA4063   542    AEARRRLRECEGLVDALLHALqsavgrkdtDNKSVENCVCIMRNLSY 588  

                   <-*
                      
   mKIAA4063     -     -    

ARM: domain 4 of 6, from 658 to 699: score 3.7, E = 1.7e+02
                   *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                        +  + + +  ++ + ++LL+++++ + +++Aa+aL Nl++   
   mKIAA4063   658    AAKGFELLYQPEVVRLYLSLLtesrNFNTLEAAAGALQNLSA    699  

ARM: domain 5 of 6, from 705 to 745: score 31.6, E = 0.00011
                   *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-*
                          +++v+++ glp Lv+LL+++ ++v++++a aL+Nl+    
   mKIAA4063   705    ATYIRATVRKERGLPVLVELLqseTDKVVRAVAIALRNLSL    745  

ARM: domain 6 of 6, from 796 to 838: score 15.3, E = 5.4
                   *->nde.nkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-*
                      ++ +n+  + +a g+paLv L+ ++++++  k+A  +L  ++s   
   mKIAA4063   796    DSLdNARSLLQARGVPALVALVassqSVREAKAASHVLQTVWS    838  

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