hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj15040/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4063  ( 968 res)   mfj15040

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Arm      Armadillo/beta-catenin-like repeat             143.8      3e-39   6
HEAT     HEAT repeat                                     32.4    1.1e-05   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Arm        1/6     356   395 ..     1    41 []     3.0       34
HEAT       1/4     361   397 ..     1    36 []     6.7       28
Arm        2/6     397   437 ..     1    41 []    41.5  1.9e-08
HEAT       2/4     402   439 ..     1    36 []    14.1      2.6
Arm        3/6     440   481 ..     1    41 []    48.2  1.9e-10
Arm        4/6     541   588 ..     1    41 []     3.8       27
Arm        5/6     658   699 ..     1    41 []    26.5  0.00062
HEAT       3/4     664   701 ..     1    36 []     3.0       94
Arm        6/6     705   745 ..     1    41 []    25.7   0.0011
HEAT       4/4     711   747 ..     1    36 []    12.9      3.9

Alignments of top-scoring domains:
Arm: domain 1 of 6, from 356 to 395: score 3.0, E = 34
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      + +     ++   lp  + +L++p   v+ +Aa+ L +L++   
   mKIAA4063   356    STRKEPRWRDP-ELPEVLAMLRHPVDPVKANAAAYLQHLCF    395  

HEAT: domain 1 of 4, from 361 to 397: score 6.7, E = 28
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                       +++d  lp +l +l++p++ V+++Aa  L++l+      
   mKIAA4063   361    PrWRDPELPEVLAMLRHPVDPVKANAAAYLQHLCFEN    397  

Arm: domain 2 of 6, from 397 to 437: score 41.5, E = 1.9e-08
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      n+  k+ v+++ +lp+Lv LL++p  ev++ A++AL+NL+    
   mKIAA4063   397    NEGIKRRVRQLRGLPLLVALLDHPRAEVRRRACGALRNLSY    437  

HEAT: domain 2 of 4, from 402 to 439: score 14.1, E = 2.6
                   *->e.lld.ellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +++++ + lpll+ ll++p +eVR+ A+ aL +l+      
   mKIAA4063   402    RrVRQlRGLPLLVALLDHPRAEVRRRACGALRNLSYGR    439  

Arm: domain 3 of 6, from 440 to 481: score 48.2, E = 1.9e-10
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      + +nk a++++G++p+Lv+LL+  +d ev+e ++++L+NL++   
   mKIAA4063   440    DTDNKAAIRDCGGVPALVRLLRaARDNEVRELVTGTLWNLSS    481  

Arm: domain 4 of 6, from 541 to 588: score 3.8, E = 27
                   *->npenkqavvea.GalppLvqLLs......spdeevqeeAawALsNLa
                       +e ++ ++e++G + +L++ L++  +++++d + +e++++ ++NL+
   mKIAA4063   541    GAEARRRLRECeGLVDALLHALQsavgrkDTDNKSVENCVCIMRNLS 587  

                   a<-*
                       
   mKIAA4063   588 Y    588  

Arm: domain 5 of 6, from 658 to 699: score 26.5, E = 0.00062
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                       ++  +++ +  ++++ ++LL++s++++++e+Aa+AL NL+a   
   mKIAA4063   658    AAKGFELLYQPEVVRLYLSLLTeSRNFNTLEAAAGALQNLSA    699  

HEAT: domain 3 of 4, from 664 to 701: score 3.0, E = 94
                   *->e.lldellplllklln.DpdpeVReaAaeaLgalaevl<-*
                        +++e++ l l+ll+++ + +  eaAa aL++l+      
   mKIAA4063   664    LlYQPEVVRLYLSLLTeSRNFNTLEAAAGALQNLSAGN    701  

Arm: domain 6 of 6, from 705 to 745: score 25.7, E = 0.0011
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                          + +v+++ +lp+Lv+LL+s+  +v++++a AL+NL+    
   mKIAA4063   705    ATYIRATVRKERGLPVLVELLQSETDKVVRAVAIALRNLSL    745  

HEAT: domain 4 of 4, from 711 to 747: score 12.9, E = 3.9
                   *->e.lldellplllkllnDpdpeVReaAaeaLgalaevl<-*
                         +++ lp+l++ll+++ ++V +a+a aL +l+      
   mKIAA4063   711    TvRKERGLPVLVELLQSETDKVVRAVAIALRNLSLDQ    747  

//