hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg09432/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4062  ( 1285 res)   mbg09432

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
FH2      Formin Homology 2 Domain                       621.0   4.1e-182   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
FH2        1/1     782  1227 ..     1   499 []   621.0 4.1e-182

Alignments of top-scoring domains:
FH2: domain 1 of 1, from 782 to 1227: score 621.0, E = 4.1e-182
                   *->pkkepkpkkkLKqLhWdklnslrssrqApsNPseisegtvWettvnd
                      pkk++kp++ L++ +W+k +           + + s++++W     +
   mKIAA4062   782    PKKVYKPEVQLRRPNWSKFV-----------AEDLSQDCFW-----T 812  

                   kldeekfLynnldldeleelFaakektkkakkrsvsekksk..lkkkkvq
                   k++e+ f +nn ++++l+  F+a++kt kakk + + +++k++++kkkv+
   mKIAA4062   813 KVKEDRF-ENNELFAKLTLAFSAQTKTSKAKK-DQEGGEEKksVQKKKVK 860  

                   qnlkilDpkrsqnpplaIllrslhcklsfeetvikeailevDedvlsvdl
                   + lk+lD+k++qn  l+I+l+s+  +++++e  ik+ ilev+e vl++++
   mKIAA4062   861 E-LKVLDSKTAQN--LSIFLGSF--RMPYQE--IKNVILEVNEAVLTESM 903  

                   leqLlkfaPYsktkeelkklreykeddekspeeLaraeqiFlllisnLip
                   +++L+k +P   ++e+lk+l e ke+    +++La++eq F +++   +p
   mKIAA4062   904 IQNLIKQMP---EPEQLKMLSELKEE----YDDLAESEQ-FGVVMGT-VP 944  

                   yleeRlnallfkanFeeevedLkpklekveaAceeLreSkkFrklLeliL
                   +l++Rlna+lfk++F+e+ve++kp + +v+aAceeLr+S++F+ lLel+L
   mKIAA4062   945 RLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTL 994  

                   aiGNyMNagsrrrrGqAqGFkLssLlkLsdvKsadnktTLLHflvkiirk
                   ++GNyMNagsr+  + A+GF++s+L+kL+d+Ksad+k+TLLHfl++++++
   mKIAA4062   995 LVGNYMNAGSRN--AGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCEN 1042 

                   kypdllkFysdlhhvdkaskvnleqlekdvkqlerqiknlEldkggLsdp
                   ++p++lkF+++l+hv+kas+v++e+l+k ++q+ +qi ++E+d+++++  
   mKIAA4062  1043 DHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAA 1092 

                   eghpddkflevmtpFlkaAkekyekLqkdlrdlktrfeklveyygedpkd
                   +++  dkf+e+mt+F+k+A+e+y+kL++++++++t++++l  y+ +dpk+
   mKIAA4062  1093 TDEK-DKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK 1141 

                   rdvspeeFFkdfneFlkeFkkaaeenlaiEskrkeeEeeerrakqlalrv
                      s eeFF+d+++F+++F+ a++en     ++++e ee++r+++la   
   mKIAA4062  1142 --LSVEEFFMDLHNFRNMFLQAVKEN-----QKRRETEEKMRRAKLA--- 1181 

                   ketteyeqssskqkeneerrvernplmdfeverdflgvldsllkelrtds
                   ke++e+e+++ kq++       r +l+d+++e+d++gv+dsll++l++++
   mKIAA4062  1182 KEKAEKERLE-KQQK-------REQLIDMNAEGDETGVMDSLLEALQSGA 1223 

                   sfer<-*
                   +f+r   
   mKIAA4062  1224 AFRR    1227 

//