hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg07137/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4061 ( 1011 res) mbg07137 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CH Calponin homology domain 68.8 6.8e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CH 1/1 907 1005 .. 1 100 [] 68.8 6.8e-16 Alignments of top-scoring domains: CH: domain 1 of 1, from 907 to 1005: score 68.8, E = 6.8e-16 *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv ++all+W+++++++ + ++tnfss+++DG++Lc+Ll+ + P + mKIAA4061 907 KRNALLKWCQKKTegyaniDITNFSSSWSDGLALCALLHTYLP-AHI 952 dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl ++ + ++k N+ la+++a++ + ++ l +e l+ ++++ mKIAA4061 953 PYQElnSQEKKRNLLLAFEAAQSV-----GINPSLELSEMLYT---DRPD 994 ilgviwtLirl<-* +v++++ ++ mKIAA4061 995 WQSVMQYVAQI 1005 //