hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07137/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4061  ( 1011 res)   mbg07137

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
CH        Calponin homology (CH) domain                 107.3    2.9e-28   1
E-MAP-115 E-MAP-115 family                              -80.7        0.4   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
E-MAP-115   1/1     296   469 ..     1   193 []   -80.7      0.4
CH          1/1     907  1010 ..     1   121 []   107.3  2.9e-28

Alignments of top-scoring domains:
E-MAP-115: domain 1 of 1, from 296 to 469: score -80.7, E = 0.4
                   *->APgkaensaAlsKptAGTTDaeEAtrL....LAEKRRqAReQrEkEE
                        +++ n+  +sK +     +  A  L+  +L EK      Q+  EE
   mKIAA4061   296    --SATSNPFKSSKGSPTGSSPNNASELslasLTEK-----IQK-MEE 334  

                   qERreqeErdrrkRE..ElkrraaEeRtlrrE...eEARrrEe..eraRe
                         eE+     E + + + + E   ++ E+   E   +E +  + Re
   mKIAA4061   335 NQHSTAEELQATLQElsDQQQMVQELT-AENEklvDEKTILETsfHQHRE 383  

                   keekKKqEGEEKRKAGEElkRkAEEeLLLKekrEqEeqErAmiqkQK..E
                    +e+                 +  E+ L+  ++E+ + E   +q  K  E
   mKIAA4061   384 RAEQ---------------LSQENEK-LINLLQERVKNEEPSAQGGKvlE 417  

                   eAEaraREeAErvRlEREkhfqqeEQERlERkKRLeEIMKRTRksevsek
                     E +     E+ R EREk +  + Q     +K  eE         + + 
   mKIAA4061   418 L-EQKCTDILEKSRFEREKLLNIQQQLTCSLRKVEEE------NQGAIDM 460  

                   VKkeDskeG<-*
                   +K     +    
   mKIAA4061   461 IKHLKEENE    469  

CH: domain 1 of 1, from 907 to 1010: score 107.3, E = 2.9e-28
                   *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL
                       +++ll+W++++++gy +         ++itnf+++w+ DGlaLcaL
   mKIAA4061   907    KRNALLKWCQKKTEGYAN---------IDITNFSSSWS-DGLALCAL 943  

                   lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi
                   l+ + P  i++    +l+ ++k  Nl la++aa++  +gi  + ++  ++
   mKIAA4061   944 LHTYLPAHIPYQ---ELNSQEKKRNLLLAFEAAQS--VGI-NPSLELSEM 987  

                   vegnpdPDeklvltllwqLirrfq<-*
                      ++ PD+++v+ +++q++++f+   
   mKIAA4061   988 LYTDR-PDWQSVMQYVAQIYKYFE    1010 

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