hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg16808/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4060  ( 1035 res)   mbg16808

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TSP1     Thrombospondin type 1 repeats                  130.0    2.6e-34   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TSP1       1/4     505   557 ..     1    66 []    70.4  2.2e-16
TSP1       2/4     798   855 ..     1    66 []    27.1   0.0024
TSP1       3/4     858   917 ..     1    66 []    25.8    0.006
TSP1       4/4     920   970 ..     1    66 []    31.6  0.00011

Alignments of top-scoring domains:
TSP1: domain 1 of 4, from 505 to 557: score 70.4, E = 2.2e-16
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w++W++ ++CS +tCG G     v+ RtR+    c +p+p    ngg
   mKIAA4060   505    WGAWTPFGSCS-RTCGTG-----VKFRTRQ----CDNPHP---ANGG 538  

                   epCs....EtrpCntqpnLqpCp<-*
                   + Cs+   +++ Cn+q    +Cp   
   mKIAA4060   539 RTCSglayDFQLCNPQ----DCP    557  

TSP1: domain 2 of 4, from 798 to 855: score 27.1, E = 0.0024
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                       ++   WSpCS ++CGgG++ ++   R+R       s       +  
   mKIAA4060   798    EWALKKWSPCS-KPCGGGSQFTKYGCRRR-----LDSK-----MVHR 833  

                   epCs.......EtrpCntqpnLqpCp<-*
                   + Cs   +++   r+Cn+q    +C+   
   mKIAA4060   834 AFCSalakpkaIRRACNPQ----ECS    855  

TSP1: domain 3 of 4, from 858 to 917: score 25.8, E = 0.006
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      ++ ++eW pC+ ++CG+     g+++R+ +    c+ p       + 
   mKIAA4060   858    VWVTGEWEPCT-QSCGRT----GMQVRSVR----CIQP-----LHNN 890  

                   epCs............EtrpCntqpnLqpCp<-*
                      s ++++ ++++++  r+Cn +     Cp   
   mKIAA4060   891 TTRSvhtkhcndhrpeSRRACNRE----LCP    917  

TSP1: domain 4 of 4, from 920 to 970: score 31.6, E = 0.00011
                   *->wseWseWSpCSgvtCGgGgrtegvrtRtRsslrvccspppprnqngg
                      w + s WS+CS vtCG G     ++ R       c  +     + ++
   mKIAA4060   920    WRAGS-WSQCS-VTCGNG-----TQERPV----LCRTA-----DDNF 950  

                   epCs.....EtrpCntqpnLqpCp<-*
                   + C +++++  r+C +     pCp   
   mKIAA4060   951 GVCReerpeTARICRLA----PCP    970  

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