hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg02624/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4057  ( 716 res)   mbg02624

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    160.0      4e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjC       1/1     487   595 ..     1   126 []   160.0    4e-44

Alignments of top-scoring domains:
JmjC: domain 1 of 1, from 487 to 595: score 160.0, E = 4e-44
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      +l +++p+S+ p+H+e+++++S+n+++++++++W+++P++y++ ++ 
   mKIAA4057   487    QLCMKVPGSRIPGHQENNNFCSVNINIGPGDCEWFVVPEDYWGVLN- 532  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     +f+ k++              l++l+++++P++++L+e+++pvyrf Q
   mKIAA4057   533 --DFCEKNN--------------LNFLMSSWWPNLEDLYEANVPVYRFIQ 566  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   +pG+ V++++g++H+v+ +G+++++++N+   
   mKIAA4057   567 RPGDLVWINAGTVHWVQAIGWCNNITWNV    595  

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