hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj33372/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4056  ( 844 res)   mfj33372

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
B41      Band 4.1 homologues                            283.0    2.3e-80   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
B41        1/1     247   442 ..     1   232 []   283.0  2.3e-80

Alignments of top-scoring domains:
B41: domain 1 of 1, from 247 to 442: score 283.0, E = 2.3e-80
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      +++ +++kV lld+t++e++v++++++++ll  vc++l+l  +e +y
   mKIAA4056   247    RHRNMHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNL--LEEDY 291  

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   FgL+++d    ++Wld+ak+i+kq++      p+++ F vkFyppd    
   mKIAA4056   292 FGLALWDSATSKTWLDSAKEIKKQVRG----VPWNFTFNVKFYPPD---- 333  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   p ql+eD+try +l+lQ+r+di+ Grlpc+ + +++lL+++ +q+e+Gdy
   mKIAA4056   334 PAQLTEDITRY-YLCLQLRQDIVAGRLPCS-FATLALLGSYTIQSELGDY 381  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   dpe         h   ++s++++ P+q               +ke++e++
   mKIAA4056   382 DPE--------LHGMDYVSDFKLAPNQ---------------TKELEEKV 408  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   +elhk +++++p++a+l++Le+a++L  +YGv+l+   
   mKIAA4056   409 MELHKSYRSMTPAQADLEFLENAKKLS-MYGVDLH    442  

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