hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj33372/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4056  ( 844 res)   mfj33372

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Band_41  FERM domain (Band 4.1 family)                  429.5   2.9e-125   1
4_1_CTD  4.1 protein C-terminal domain (CTD)            245.0      1e-69   1
SAB      SAB domain                                     113.1    5.5e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Band_41    1/1     253   442 ..     1   210 []   429.5 2.9e-125
SAB        1/1     630   695 ..     1    72 []   113.1  5.5e-30
4_1_CTD    1/1     727   841 ..     1   114 []   245.0    1e-69

Alignments of top-scoring domains:
Band_41: domain 1 of 1, from 253 to 442: score 429.5, E = 2.9e-125
                   *->ctvtllDstveeFkveKkdkGqvLLdkVfkhLglrEkdYFGLQylDd
                      c+v+llD+tv+e++veK++kGq+LL++V++hL+l+E+dYFGL+++D 
   mKIAA4056   253    CKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLALWD- 298  

                   DnsskdsptWLdpsKkirkQdvkkeePytLhFRvKFYpeDvpneLrqeiT
                      s++s+tWLd++K+i+kQ  ++++P++++F+vKFYp+D p++L+++iT
   mKIAA4056   299 ---SATSKTWLDSAKEIKKQ--VRGVPWNFTFNVKFYPPD-PAQLTEDIT 342  

                   rylffLQvkqdIleGrlpCpfetAvLLASYaVQsefGDYneslHkaGRtC
                   ry+++LQ++qdI++GrlpC+f+t++LL+SY++Qse+GDY+++lH+++   
   mKIAA4056   343 RYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGMD--- 389  

                   LCYLsdekllPqRVlnqkqltkddfEekIaelHkeHrGmspdeAeleYLk
                     Y+sd+kl+P    n  q  ++++Eek++elHk++r+m+p++A+le+L+
   mKIAA4056   390 --YVSDFKLAP----N--Q--TKELEEKVMELHKSYRSMTPAQADLEFLE 429  

                   iArdLemYGVdff<-*
                   +A++L+mYGVd++   
   mKIAA4056   430 NAKKLSMYGVDLH    442  

SAB: domain 1 of 1, from 630 to 695: score 113.1, E = 5.5e-30
                   *->kkkeerlegesiyvrhsnLkleeLDKtQDellKHqASIsELKRtFmE
                       k +e ++ +  ++       ++LDK+Q+e++KH+ASIsELK++FmE
   mKIAA4056   630    EKRGEEPAEPAEPEPTE--AWKDLDKSQEEIKKHHASISELKKNFME 674  

                   snStpeprpnEWEREKRLsThSPvr<-*
                   s  +peprp+EW+  KRLsThSP+r   
   mKIAA4056   675 S--VPEPRPSEWD--KRLSTHSPFR    695  

4_1_CTD: domain 1 of 1, from 727 to 841: score 245.0, E = 1e-69
                   *->keeistksVpivnrevkTiTYesaqvD.ngadldpGvLltaqtiTsE
                      k+ei+tk+Vpiv++e+kTiTYe+aq++++ +dldpGvLltaqtiTsE
   mKIAA4056   727    KSEIPTKDVPIVHTETKTITYEAAQTEdSNGDLDPGVLLTAQTITSE 773  

                   tlSttTTThiTKTvkgGisETriEkrivItgDgDiDhDqaLaqAIkEAke
                   t+S+tTTT+iTKTvkgGisETriEkrivItgD+DiDhDq+L+qAIkEAke
   mKIAA4056   774 TTSSTTTTQITKTVKGGISETRIEKRIVITGDADIDHDQVLVQAIKEAKE 823  

                   qhPDMsVtKvvVhqeTei<-*
                   qhPDMsVtKvvVhqeTei   
   mKIAA4056   824 QHPDMSVTKVVVHQETEI    841  

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