hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4055  ( 794 res)   mfj06069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PSI      domain found in Plexins, Semaphorins and Int    55.5    6.7e-12   1
IG       Immunoglobulin                                  29.7    0.00039   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/1     538   590 ..     1    56 []    55.5  6.7e-12
IG         1/1     605   691 ..     1    58 []    29.7  0.00039

Alignments of top-scoring domains:
PSI: domain 1 of 1, from 538 to 590: score 55.5, E = 6.7e-12
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                      rC+ yg + C+eC+lardpy C+W+  ++ C+r+  + +rr +rq++
   mKIAA4055   538    RCDIYG-KACAECCLARDPY-CAWD--GSSCSRYFPTAKRRTRRQDI 580  

                   ssg.pssqCp<-*
                   ++g+p ++C+   
   mKIAA4055   581 RNGdPLTHCS    590  

IG: domain 1 of 1, from 605 to 691: score 29.7, E = 0.00039
                   *->pp.vtvkeGesvtLtC.as....titWy...................
                       + ++++e +s  L+C+ ++    ++W  ++++ +++   + +++  
   mKIAA4055   605    ERiIYGVENSSTFLECsPKsqraLVYWQfqrrnedrkeeirmgdhii 651  

                   .....LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-*
                   ++ ++L ++++++ Ds   G+Y C a  ++ +++    +tL+V    
   mKIAA4055   652 rteqgLLLrSLQKKDS---GNYLCHAVehGFMQTL-LKVTLEVI    691  

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