hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj06069/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4055  ( 794 res)   mfj06069

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
Sema     Sema domain                                    885.1   2.1e-262   1
ig       Immunoglobulin domain                           20.3      0.045   1
PSI      Plexin repeat                                   16.1      0.018   1
V-set    Immunoglobulin V-set domain                      2.9       0.31   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
Sema       1/1      79   520 ..     1   490 []   885.1 2.1e-262
PSI        1/1     538   590 ..     1    63 []    16.1    0.018
ig         1/1     613   674 ..     1    65 []    20.3    0.045
V-set      1/1     600   687 ..     1   130 []     2.9     0.31

Alignments of top-scoring domains:
Sema: domain 1 of 1, from 79 to 520: score 885.1, E = 2.1e-262
                   *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek
                      ++t+llde+r+rLyVGA++h++++nl +++++  qki Wp+s   ++
   mKIAA4055    79    YHTFLLDEERSRLYVGAKDHIFSFNLVNIKDF--QKIVWPVS--YTR 121  

                   ceeCkmkgkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl
                   ++eCk++gk++   ++eC+Nfi+VL++yn+thLy+CGT+aF+P Ct+i++
   mKIAA4055   122 RDECKWAGKDI---LKECANFIKVLEAYNQTHLYACGTGAFHPICTYIEV 168  

                   gdrseaviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL
                   g+++e       d++F+l+  ++e+G+g++PydP+  ++s+l+ +  geL
   mKIAA4055   169 GHHPE-------DNIFKLQDSHFENGRGKSPYDPKLLTASLLI-D--GEL 208  

                   YsGtviDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy
                   YsGt++D      F+Grd+aI+R+lg+h+p+rTeqhds+wln+P F++++
   mKIAA4055   209 YSGTAAD------FMGRDFAIFRTLGHHHPIRTEQHDSRWLNDPRFISAH 252  

                   pipyvhsfdDdkVYFFFrEtaveyspnsgkaiysRVaRvCknDvGGrryl
                   +ip++++++DdkVYFFFrE+a + + +sgka+++R++++CknD GG+r+l
   mKIAA4055   253 LIPESDNPEDDKVYFFFRENAIDGE-HSGKATHARIGQICKNDFGGHRSL 301  

                   elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs
                   + nkWTTFLKARL+CSvpG++gi+ ++F+eLQ+vfl+ + ++        
   mKIAA4055   302 V-NKWTTFLKARLICSVPGPNGID-THFDELQDVFLMNSKDP-------- 341  

                   erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqsnEg
                    ++p++YGVFttssn+++g    SAVC++smsd+r+vF  Gp++h   +g
   mKIAA4055   342 -KNPIVYGVFTTSSNIFKG----SAVCMYSMSDVRRVF-LGPYAHR--DG 383  

                   pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm
                   pn++w+py+g +vPyPRPG+Cp++++g +++StkdlPDd+++f++shp m
   mKIAA4055   384 PNYQWVPYQG-RVPYPRPGTCPSKTFG-GFDSTKDLPDDVITFARSHPAM 431  

                   devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt
                   +++v P++nrP++++t+vny++TqI+Vd rV+a+dGq Y+V+F+GTd+Gt
   mKIAA4055   432 YNPVFPINNRPIMIKTDVNYQFTQIVVD-RVDAEDGQ-YDVMFIGTDVGT 479  

                   vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-*
                   vl kvv+++++ ++ +eev+lee++vf++p    ++ +e+s kq   
   mKIAA4055   480 VL-KVVSVPKETWhDLEEVLLEEMTVFREP--TTISAMELSTKQ    520  

PSI: domain 1 of 1, from 538 to 590: score 16.1, E = 0.018
                   *->nCsqy.tsCssCLaardpfyCgWCssegrC..........trgsayt
                      +C  y++ C++C +ardp yC+W++s  +C++  ++ +++tr++   
   mKIAA4055   538    RCDIYgKACAECCLARDP-YCAWDGS--SCsryfptakrrTRRQ--- 578  

                   sfyGeCpraependqwldwswssskCp<-*
                       + ++++              +C    
   mKIAA4055   579 ----DIRNGD-----------PLTHCS    590  

ig: domain 1 of 1, from 613 to 674: score 20.3, E = 0.045
                   *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
                      ++s  L Cs     +  + v+W+++  +  + ++++   +  +  ++
   mKIAA4055   613    NSSTFLECSP---KSQRALVYWQFQRRnEDrKEEIRMGDHIIRTEQG 656  

                   tsLtitnvtpeDggtYtCvv<-*
                     L ++++++ D+g+Y C++   
   mKIAA4055   657 --LLLRSLQKKDSGNYLCHA    674  

V-set: domain 1 of 1, from 600 to 687: score 2.9, E = 0.31
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysGtfddsssss
                        ++++   r           + ++e  s  L C+++        s+
   mKIAA4055   600    GPSLEE---R----------IIYGVENSSTFLECSPK--------SQ 625  

                   gtgsvyWyrqqppGekpeliiisyytyysysegngtvserfkgrvrfsgn
                   +   vyW + q+                          e+ k+ +r+  +
   mKIAA4055   626 RA-LVYWQF-QRR------------------------NEDRKEEIRMGDH 649  

                   pskgdfsLtIsnlqlsDsGtYyCa.....gggtrLtVl<-*
                   + ++   L +++lq  DsG Y C+  +++   t L V+   
   mKIAA4055   650 IIRTEQGLLLRSLQKKDSGNYLCHavehgFMQTLLKVT    687  

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