hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07434/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4053  ( 1400 res)   mbg07434

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IPT      ig-like, plexins, transcription factors        314.1      1e-89   4
PSI      domain found in Plexins, Semaphorins and Int   120.0    2.7e-31   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PSI        1/3      18    68 ..     1    56 []    51.2  1.4e-10
PSI        2/3     164   211 ..     1    56 []    37.4  1.9e-06
PSI        3/3     312   366 ..     1    56 []    47.7  1.5e-09
IPT        1/4     367   463 ..     1   111 []   102.4  5.1e-26
IPT        2/4     464   549 ..     1   111 []    87.0  2.3e-21
IPT        3/4     551   651 ..     1   111 []   101.3  1.1e-25
IPT        4/4     653   748 ..     1   111 []    33.7  2.5e-05

Alignments of top-scoring domains:
PSI: domain 1 of 3, from 18 to 68: score 51.2, E = 1.4e-10
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C qy  tsC+ Cl++rdp+ CgWC++++ C+r+ +C ++++ +q  
   mKIAA4053    18    SCVQY--TSCELCLGSRDPH-CGWCVLHSICSRQDACERAEE-PQRF 60   

                   ssgpssqCp<-*
                    s +  qC    
   mKIAA4053    61 AS-DLLQCV    68   

PSI: domain 2 of 3, from 164 to 211: score 37.4, E = 1.9e-06
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrg.erCderrgsrqn
                      +Cs++  +sC +C+  + p  C+WC++++ Ct   ++C   +g r n
   mKIAA4053   164    NCSVH--QSCLACVNGSFP--CHWCKYRHVCTNNaADCAFLEG-RVN 205  

                   wssgpssqCp<-*
                   +s      Cp   
   mKIAA4053   206 MSE----DCP    211  

PSI: domain 3 of 3, from 312 to 366: score 47.7, E = 1.5e-09
                   *->rCsqygvtsCseCllardpygCgWCssegrCtrgerCderrgsrqnw
                       C +++ +sC+ Cl a+++++CgWC+ e+rC+ +++C+ ++   ++w
   mKIAA4053   312    KCPALR-QSCGLCLKADPRFECGWCVAERRCSLRHHCPADSP--ASW 355  

                   ssg..pssqCp<-*
                   ++++++ss C+   
   mKIAA4053   356 MHAhhGSSRCT    366  

IPT: domain 1 of 4, from 367 to 463: score 102.4, E = 5.1e-26
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                      dP+I+++sP++Gp++GGt r+t++G nL+ ++++v+  v+vg    +
   mKIAA4053   367    DPKILKLSPETGPRQGGT-RLTITGENLGLRFEDVRLGVHVG----K 408  

                   vpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdng
                   v C+++ s+++   s+++ivC+++ +++  + +++ v+v    +v  ++ 
   mKIAA4053   409 VLCSPVESEYI---SAEQIVCEIGDAST-LRaHDALVEV----CVRDCSL 450  

                   gvrtelsppspFtYv<-*
                   ++r+  ++p++Ft+v   
   mKIAA4053   451 HYRA--LSPKRFTFV    463  

IPT: domain 2 of 4, from 464 to 549: score 87.0, E = 2.3e-21
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGrvWe
                       P+++r+sPs+GplsGGt +i ++G++L++ gs+v v++g      +
   mKIAA4053   464    TPTFYRVSPSRGPLSGGT-WIGIEGSHLNA-GSDVAVSIG------G 502  

                   vpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdngg
                   +pC+f+++      +s +i+C tPp++    +pgs+p+     + +   +
   mKIAA4053   503 RPCSFSWR------NSREIRCLTPPGH----TPGSAPI----VINI---N 535  

                   vrtel.sppspFtYv<-*
                   + + l++p   + Y+   
   mKIAA4053   536 RAQ-LsNPEVKYNYT    549  

IPT: domain 3 of 4, from 551 to 651: score 101.3, E = 1.1e-25
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      dP+I+ri+P++++ sGGt ++t++G+nL + + ++++r ++gG +  
   mKIAA4053   551    DPTILRIDPEWSINSGGT-LLTVTGTNLAT-VREPRIRAKYGGIeR- 594  

                   evpCtflpsdvhGkdsstaivCrtPpylnqsp.gpgsvpvrvtgevgfdn
                   e++C++ ++        t++vCr+P++ n+++++p  ++ ++  e+gf++
   mKIAA4053   595 ENSCMVYND--------TTMVCRAPSIDNPKRsPPELGERPD--EIGFIM 634  

                   ggvrtel.sppspFtYv<-*
                   ++vrt+l +++s+F Y+   
   mKIAA4053   635 DNVRTLLvLNSSSFLYY    651  

IPT: domain 4 of 4, from 653 to 748: score 33.7, E = 2.5e-05
                   *->dPvItrisPssGplsGGteritlcGknLdsdgsvvfvrvgvgGr.vW
                      dPv + +sP+        + + l+G+nL +   +   r+++    + 
   mKIAA4053   653    DPVLEPLSPTGLLELKPSSPLILKGRNLLP-PAPGNSRLNYTVLiG- 697  

                   evpCtflpsdvhGkdsstaivCrtPpylnqspgpgsvpvrvtgevgfdng
                   ++pC ++        s+t+++C++P  ++q  + ++v+  ++ e++ ++ 
   mKIAA4053   698 STPCILTV-------SETQLLCEAPNLTGQ--HKVTVRAGGF-EFSPGML 737  

                   gvrtelsppspFtYv<-*
                   +v+++    s +t     
   mKIAA4053   738 QVYSD----SLLTLP    748  

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