hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/TIGRFAMs_HMM.LIB
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02817/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4051  ( 721 res)   mbh02817

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
sensory_box sensory_box: PAS domain S-box                22.2      0.012   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
sensory_box   1/1     279   402 ..     1   130 []    22.2    0.012

Alignments of top-scoring domains:
sensory_box: domain 1 of 1, from 279 to 402: score 22.2, E = 0.012
                   *->reseeryraifesspdaiivvdleGnilyvnpafeelfGysaeellG
                        + +    i++ +   i  ++ eG++++v ++     Gy ++ellG
   mKIAA4051   279    SPNCTDMSNICQPTE-FISRHNIEGIFTFVDHRCVATVGYQPQELLG 324  

                   rnvlelipeedreelrerierlletgerepvseerrvlgrrkdGseiwve
                   +n+ e+ ++ed + lr  ++++ +  ++++ s  +r+  r k  +++w++
   mKIAA4051   325 KNIVEFCHPEDQQLLRDSFQQVVK-LKGQVLSVMFRF--RSKTREWLWMR 371  

                   vsvspirdsnggvlgvlgivrDiterkeaeeal<-*
                    s     + +++++ ++      t  k++ ++    
   mKIAA4051   372 TSSFTFQNPYSDEIEYIICT--NTNVKNSSQEP    402  

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