hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02817/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4051  ( 721 res)   mbh02817

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS domain                                      89.3    4.7e-22   2
HLH      helix loop helix domain                         63.8    2.3e-14   1
PAC      Motif C-terminal to PAS motifs (likely to co    29.3    0.00053   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1      26    79 ..     1    61 []    63.8  2.3e-14
PAS        1/2      94   161 ..     1    68 []    49.6    4e-10
PAS        2/2     283   348 ..     1    68 []    39.6  4.1e-07
PAC        1/1     355   398 ..     1    43 []    29.3  0.00053

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 26 to 79: score 63.8, E = 2.3e-14
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      +++ER  rRR+k+   ++ eL+++vPt+    +  +K++K++iLr+A
   mKIAA4051    26    SEIER--RRRNKMTA-YITELSDMVPTCS---ALARKPDKLTILRMA 66   

                   ieYIrksLqeqlqe<-*
                   ++++ ksL+    +   
   mKIAA4051    67 VSHM-KSLRGTGNT    79   

PAS: domain 1 of 2, from 94 to 161: score 49.6, E = 4e-10
                   *->erlraileslpdgiivld.ldGrilyaNpaaeellGyspeeliGksl
                      e  + ile+++ ++++++ ++Gr++y++++++  l++++ e+ G +l
   mKIAA4051    94    ELKHLILEAADGFLFIVScETGRVVYVSDSVTPVLNQPQSEWFGSTL 140  

                   lelihpedrlleevqe.lqrlla<-*
                   ++ +hp+d   + ++e+l ++ +   
   mKIAA4051   141 YDQVHPDDV--DKLREqLSTSEN    161  

PAS: domain 2 of 2, from 283 to 348: score 39.6, E = 4.1e-07
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       ++++i + + ++i +++ +G ++++++++   +Gy p+el+Gk++ 
   mKIAA4051   283    TDMSNICQPT-EFISRHNIEGIFTFVDHRCVATVGYQPQELLGKNIV 328  

                   elihpedrlleevqe.lqrlla<-*
                   e++hped+  + +++++q++++   
   mKIAA4051   329 EFCHPEDQ--QLLRDsFQQVVK    348  

PAC: domain 1 of 1, from 355 to 398: score 29.3, E = 0.00053
                   *->tveyrlrrkdGsliwvlvsaspird.edgevegilgvvrDITer<-*
                      +v +r+r k+ ++ w ++s   + ++ ++e+e+i+++++++      
   mKIAA4051   355    SVMFRFRSKTREWLWMRTSSFTFQNpYSDEIEYIICTNTNVKNS    398  

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