hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh02817/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4051  ( 721 res)   mbh02817

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PAS      PAS fold                                        83.2    5.3e-21   2
HLH      Helix-loop-helix DNA-binding domain             66.1    7.2e-16   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
HLH        1/1      21    74 ..     1    53 []    66.1  7.2e-16
PAS        1/2      94   201 ..     1   123 []    76.0  8.1e-19
PAS        2/2     283   395 ..     1   123 []     7.2     0.54

Alignments of top-scoring domains:
HLH: domain 1 of 1, from 21 to 74: score 66.1, E = 7.2e-16
                   *->rRrahnarERrRRdriNdafeeLrellPtla..pskKlsKaeiLrlA
                      +R++h+++ERrRR+++   + eL +++Pt ++   +K +K++iLr+A
   mKIAA4051    21    ARENHSEIERRRRNKMTAYITELSDMVPT-CsaLARKPDKLTILRMA 66   

                   veYIksLq<-*
                   v+++ksL+   
   mKIAA4051    67 VSHMKSLR    74   

PAS: domain 1 of 2, from 94 to 201: score 76.0, E = 8.1e-19
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      e+ + ile+ ++ + f+v +e Gr++yv+++ +  l+++++e+ G +
   mKIAA4051    94    ELKHLILEA-ADGFLFIVSCETGRVVYVSDSVTPVLNQPQSEWFGST 139  

                   lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp
                   l+d+++++      ++++l+++l + e+  +++v   +         g++
   mKIAA4051   140 LYDQVHPD------DVDKLREQLSTSENaLTGRVLDLK--------TGTV 175  

                   ihvevraspvrdaggeilgflgvlrDi<-*
                   +   ++ s+++++g+++  f++++r+    
   mKIAA4051   176 KKEGQQSSMRMCMGSRR-SFICRMRCG    201  

PAS: domain 2 of 2, from 283 to 395: score 7.2, E = 0.54
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      +d+++i +   +++i   +   G++++v +      G++++e++Gk+
   mKIAA4051   283    TDMSNICQP--TEFISRHN-IEGIFTFVDHRCVATVGYQPQELLGKN 326  

                   lldlipeeddaeclvaelllqaleqgee.rgvevsfrvsgqrflvrdgrp
                   ++++ ++ed++   +++ ++q+ + +++  +v  +fr          ++ 
   mKIAA4051   327 IVEFCHPEDQQL--LRDSFQQVVKLKGQvLSVMFRFRS---------KTR 365  

                   ihvevraspvrd...aggeilgflgvlrDi<-*
                    ++ +r+s ++++++ ++ei +++++   +   
   mKIAA4051   366 EWLWMRTSSFTFqnpYSDEIEYIICTNTNV    395  

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