hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07005/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4050  ( 762 res)   mbg07005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD zinc finger                                123.4    2.5e-32   4
FYRN     "FY-rich" domain, N-terminal region             82.4    5.4e-20   1
BROMO    bromo domain                                    49.7    3.9e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/4      26    73 ..     1    39 []    25.1   0.0099
PHD        2/4      74   124 ..     1    39 []    50.6    2e-10
PHD        3/4     161   221 ..     1    39 []    41.0  1.6e-07
BROMO      1/1     229   363 ..     1   118 []    49.7  3.9e-10
PHD        4/4     528   574 ..     1    39 []    30.1   0.0003
FYRN       1/1     626   669 ..     1    46 []    82.4  5.4e-20

Alignments of top-scoring domains:
PHD: domain 1 of 4, from 26 to 73: score 25.1, E = 0.0099
                   *->yC.vCgk...g.llqCdkgCdrwyHv.Clgpple...epdg.wyCpr
                      +C +C ++++ +++ C   C+  +H  Cl   +++ +++ ++w+C r
   mKIAA4050    26    VCfLCASsghVeFVYCQ-VCCEPFHKfCLEENERpleDQLEnWCCRR 71   

                   Ck<-*
                   Ck   
   mKIAA4050    72 CK    73   

PHD: domain 2 of 4, from 74 to 124: score 50.6, E = 2e-10
                   *->yC.vCgk.....g.llqCdkgCdrwyHv.Clgpple....epdg.wy
                      +C+vCg+ +  + +ll C+ +C+ +yH++Clgp  +++++ +++ w+
   mKIAA4050    74    FChVCGRqhqatKqLLECN-KCRNSYHPeCLGPNYPtkptKKKKvWI 119  

                   CprCk<-*
                   C +C+   
   mKIAA4050   120 CTKCV    124  

PHD: domain 3 of 4, from 161 to 221: score 41.0, E = 1.6e-07
                   *->yC.vCgk........g.llqCdkgCdrwyHv.Clgpple........
                      +C++C+k  ++++ +++++qC  +Cdrw+H +C ++++++++  +  
   mKIAA4050   161    FCpLCDKcyddddyeSkMMQCG-KCDRWVHSkCESLSGTedemyeil 206  

                   ...epdg.wyCprCk<-*
                   ++ +++  + C +C+   
   mKIAA4050   207 snlPESVaYTCVNCT    221  

BROMO: domain 1 of 1, from 229 to 363: score 49.7, E = 3.9e-10
                   *->spk.qkklqellkallekldshgvps.....................
                      + +  k+lq+ lk++l +l +++++s+  + ++  ++++ +++++++
   mKIAA4050   229    RLAlEKELQASLKQVLTALLNSRTTShllryrqaakppdlnpetees 275  

                   ..srGrplawpFlepvdkkeLgvPDYydiIkkPMDLktIkkklengkYss
                    +sr+ p ++   ++ ++++       +  ++P+DL+ +kk++++g Y+s
   mKIAA4050   276 ipSRSSPEGPDPPVLTEVSK-------QDEQQPLDLEGVKKRMDQGSYVS 318  

                   leeFvaDfnLmfsNAktYNe.pdsevykdAkkLeklfeeklkelpp<-*
                   + eF +D+  + + A +   +   e+ k+  + +++f+++++ ++p   
   mKIAA4050   319 VLEFSDDIVKIIQ-AAINSDgGQPEIKKANSMVKSFFIRQMERVFP    363  

PHD: domain 4 of 4, from 528 to 574: score 30.1, E = 0.0003
                   *->yC.vCgk.g.llqCd.kgCdrwyHv.Clgpple..epdg.wyCprCk
                      +C++C+k+g +++C  ++C   yH+ C + + +  + d++ yC r++
   mKIAA4050   528    RCeFCQKpGaTVGCClTSCTSNYHFmCSRAKNCvfLDDKkVYCQRHR 574  

                   <-*
                      
   mKIAA4050     -     -    

FYRN: domain 1 of 1, from 626 to 669: score 82.4, E = 5.4e-20
                   *->llpiqsklfhsesaIfPvGYkatRkYwSvkdPnrrclYtiscvIde<
                      +l+i+++l+++e+++fP+GY+++R+YwS++d+++rc+Y  +c+I+e 
   mKIAA4050   626    CLGILNDLSDCEDKLFPIGYQCSRVYWSTTDARKRCVY--TCKIME  669  

                   -*
                     
   mKIAA4050     -    -    

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