hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg07005/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4050  ( 762 res)   mbg07005

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PHD      PHD-finger                                     101.9    1.2e-26   3
FYRN     F/Y-rich N-terminus                             73.6      4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PHD        1/3      26    75 ..     1    51 []    34.4  2.7e-06
PHD        2/3      76   126 ..     1    51 []    34.8    2e-06
PHD        3/3     161   223 ..     1    51 []    47.7  2.6e-10
FYRN       1/1     619   669 ..     1    55 []    73.6    4e-18

Alignments of top-scoring domains:
PHD: domain 1 of 3, from 26 to 75: score 34.4, E = 2.7e-06
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple..eppegkWlC
                       C++C + +     +++ C  C+++fH +Cl   +++ e++ ++W+C
   mKIAA4050    26    VCFLCASSG---HVEFVYCQVCCEPFHKFCLEENERplEDQLENWCC 69   

                   peCtpk<-*
                   ++C+++   
   mKIAA4050    70 RRCKFC    75   

PHD: domain 2 of 3, from 76 to 126: score 34.8, E = 2e-06
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgpple...eppegkWl
                         vCg+ +  a ++ll C +C  ++H++Clgp  ++++  ++  W+
   mKIAA4050    76    --HVCGRQH-QATKQLLECNKCRNSYHPECLGPNYPtkpTKKKKVWI 119  

                   CpeCtpk<-*
                   C +C+++   
   mKIAA4050   120 CTKCVRC    126  

PHD: domain 3 of 3, from 161 to 223: score 47.7, E = 2.6e-10
                   *->yCsvCgkpddd..aggdllqCDgCdrwfHlaClgpple.........
                      +C++C k++dd++++ +++qC +Cdrw+H +C +++ ++++  +  +
   mKIAA4050   161    FCPLCDKCYDDddYESKMMQCGKCDRWVHSKCESLSGTedemyeils 207  

                   .eppegkWlCpeCtpk<-*
                   + p+++ ++C +Ct++   
   mKIAA4050   208 nLPESVAYTCVNCTER    223  

FYRN: domain 1 of 1, from 619 to 669: score 73.6, E = 4e-18
                   *->igaltvvkLGvIvpdnsksfhnenaIyPiGYksrrkylSvldptnlt
                      ig++t+ +LG +    ++++++e++++PiGY+++r+y+S+ d+++++
   mKIAA4050   619    IGSMTIDCLGIL----NDLSDCEDKLFPIGYQCSRVYWSTTDARKRC 661  

                   lYtcevLd<-*
                   +Ytc++ +   
   mKIAA4050   662 VYTCKIME    669  

//