hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mbg/mbg01111/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4049 ( 1290 res) mbg01111 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SPEC Spectrin repeats 756.4 7.1e-223 9 CH Calponin homology domain 205.1 6.3e-57 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CH 1/2 65 165 .. 1 100 [] 108.5 7.5e-28 CH 2/2 184 282 .. 1 100 [] 97.0 2.2e-24 SPEC 1/9 314 420 .. 1 104 [] 4.3 3.6 SPEC 2/9 434 534 .. 1 104 [] 100.8 1.6e-25 SPEC 3/9 540 644 .. 1 104 [] 105.1 8.1e-27 SPEC 4/9 650 750 .. 1 104 [] 126.0 4e-33 SPEC 5/9 756 855 .. 1 104 [] 100.4 2e-25 SPEC 6/9 861 961 .. 1 104 [] 94.5 1.3e-23 SPEC 7/9 967 1068 .. 1 104 [] 91.3 1.2e-22 SPEC 8/9 1074 1175 .. 1 104 [] 96.5 3.2e-24 SPEC 9/9 1181 1281 .. 1 104 [] 96.2 3.8e-24 Alignments of top-scoring domains: CH: domain 1 of 2, from 65 to 165: score 108.5, E = 7.5e-28 *->eeeallrWinsll.....kvtnfssdlkDGvvLckLlnslsPagsvd +++++++W+ns+l + + ++t++++dl+DG+ L+kLl++ls + + mKIAA4049 65 QKKTFTKWVNSHLarvscRITDLYTDLRDGRMLIKLLEVLSG-ERLP 110 kkk....rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkk k ++++ r+++leN+ al+f++++ + +++ +++D+v+g n++ mKIAA4049 111 KPTkgrmRIHCLENVDKALQFLKEQ-----RVHLENMGSHDIVDG--NHR 153 lilgviwtLirl<-* l+lg+iwt+i++ mKIAA4049 154 LTLGLIWTIILR 165 CH: domain 2 of 2, from 184 to 282: score 97.0, E = 2.2e-24 *->eeeallrWinsll......kvtnfssdlkDGvvLckLlnslsPagsv +++all W++ ++ + ++ ++ nf+++++DG+++++L+++++P +++ mKIAA4049 184 AKDALLLWCQMKTagypnvNIHNFTTSWRDGMAFNALIHKHRP-DLI 229 dkkk..rfkkleNinlalsfaeklgafLGvgkvvlfdpeDlvegnenkkl d++k ++++++ N+++a+++ae + +g ++l+dpeD+ ++++ mKIAA4049 230 DFDKlkKSNAHYNLQNAFNLAEQH-----LGLTKLLDPEDISV---DHPD 271 ilgviwtLirl<-* ++++i++++ + mKIAA4049 272 EKSIITYVVTY 282 SPEC: domain 1 of 9, from 314 to 420: score 4.3, E = 3.6 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +++ + a +l++W+e + +l+ ++ ++l +v+++l+ + + ++ mKIAA4049 314 EKYESLASDLLEWIEQTIIILNNRKFA--NSLVGVQQQLQAFNTYRT 358 el.aaheervdalnelgeqLieesghpdaeeIeerl.....eeLnerWee + + + +l+ l + ++ ++ +++ ++++ ++n++We+ mKIAA4049 359 VEkPPKFTEKGNLEVLLFTIQSK-MRANNQKVYMPRegkliSDINKAWER 407 LlelaeeRrqkLe<-* L+++ eR+ +L mKIAA4049 408 LEKAEHERELALR 420 SPEC: domain 2 of 9, from 434 to 534: score 100.8, E = 1.6e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F r+a+ e Wl+e ++l+s++++g Dl++vea kkH+a+e+ mKIAA4049 434 RRFDRKAAMRETWLSENQRLVSQDNFG--FDLPAVEAATKKHEAIET 478 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae ++aa+eerv+a+ + +++L +e + +d + I +r +++ + We Llel++ mKIAA4049 479 DIAAYEERVQAVMAVARELEAE-NYHDIKRITARKDNVIRLWEYLLELLR 527 eRrqkLe<-* +Rrq+Le mKIAA4049 528 ARRQRLE 534 SPEC: domain 3 of 9, from 540 to 644: score 105.1, E = 8.1e-27 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea q+ ++++ +++W++e+++ll s+d+g k+l +ve+ll+kH ea mKIAA4049 540 QKIFQEMLYIMDWMDEMKVLLLSQDYG--KHLLGVEDLLQKHALVEA 584 elaaheervdalnelgeqLiee...sghpdaeeIeerleeLnerWeeLle ++a ++erv +n+ ++++ +++++++ d + I++r+++++ ++eL++ mKIAA4049 585 DIAIQAERVRGVNASAQKFATDgegYKPCDPQVIRDRVAHMEFCYQELCQ 634 laeeRrqkLe<-* la+eRr++Le mKIAA4049 635 LAAERRARLE 644 SPEC: domain 4 of 9, from 650 to 750: score 126.0, E = 4e-33 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++F+++++e+e W++eke++lss+d+g kDl+sv++ll kH a+e+ mKIAA4049 650 WKFFWEMAEEEGWIREKEKILSSDDYG--KDLTSVMRLLSKHRAFED 694 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++ + +++ +++ge++i+e +h+ +e+I+er+ ++e+W++L++l++ mKIAA4049 695 EMSGRSGHFEQAIKEGEDMIAE-EHFGSEKIRERIIYIREQWANLEQLSA 743 eRrqkLe<-* R+++Le mKIAA4049 744 IRKKRLE 750 SPEC: domain 5 of 9, from 756 to 855: score 100.4, E = 2e-25 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea +qF++dad+++aW+ + +++ss d+g +D+ s ++l kkH++ + mKIAA4049 756 HQFQADADDIDAWMLDILKIVSSNDVG--HDEYSTQSLVKKHKDVAE 800 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++++++++d+l+e++ +L ++ h+++++++ rl+ ++er +e el++ mKIAA4049 801 EITNYRPTIDTLHEQASALPQA--HAESPDVKGRLAGIEERCKEMAELTR 848 eRrqkLe<-* R+q+L+ mKIAA4049 849 LRKQALQ 855 SPEC: domain 6 of 9, from 861 to 961: score 94.5, E = 1.3e-23 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea ++ +++ad e W++ekeq+l+ + ++ le++e+ +++++ le mKIAA4049 861 YKMFSEADACELWIDEKEQWLNNMQIP--EKLEDLEVIQHRFESLEP 905 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e+++++ rv +n+ ++qL+ + ghp +eI++++++Ln+rW + +el++ mKIAA4049 906 EMNNQASRVAVVNQIARQLMHN-GHPSEKEIRAQQDKLNTRWSQFRELVD 954 eRrqkLe<-* +++ +L mKIAA4049 955 RKKDALL 961 SPEC: domain 7 of 9, from 967 to 1068: score 91.3, E = 1.2e-22 *->qqFlrdadeleaWleeke.qllssedlgeskDlesveallkkHqale q ++ +++e+++W++ek +++ s++dlg +Dl++v+al++k+ e mKIAA4049 967 QNYHLECNETKSWIREKTkVIESTQDLG--NDLAGVMALQRKLTGME 1011 aelaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlela ++l a e+++++l++++e+L +e ++++a++I rl+e+ + Wee + + mKIAA4049 1012 RDLVAIEAKLSDLQKEAEKLESE-HPDQAQAILSRLAEISDVWEEMKTTL 1060 eeRrqkLe<-* ++R++ L mKIAA4049 1061 KNREASLG 1068 SPEC: domain 8 of 9, from 1074 to 1175: score 96.5, E = 3.2e-24 *->qqFlrdadeleaWleekeqllssedlgeskDlesveallkkHqalea qqFlrd+d++ +Wl+ ++++ +sed++ ++l+++e+ll +H+ +++ mKIAA4049 1074 QQFLRDLDDFQSWLSRTQTAIASEDMP--NTLTEAEKLLTQHENIKN 1118 elaaheervdalnelgeqLieesghpdaeeIeerleeLnerWeeLlelae e++++ee ++++ ++ge + + +++ +++rl++L++ W+eL++++e mKIAA4049 1119 EIDNYEEDYQKMRDMGEMVTQGQTDAQYMFLRQRLQALDTGWNELHKMWE 1168 eRrqkLe<-* +R++ L mKIAA4049 1169 NRQNLLS 1175 [output cut off at A = 10 top alignments] //