hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mbg/mbg01111/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4049 ( 1290 res) mbg01111 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Spectrin Spectrin repeat 846.6 8.5e-251 9 CH Calponin homology (CH) domain 263.2 3.6e-75 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CH 1/2 65 167 .. 1 121 [] 124.9 1.5e-33 CH 2/2 184 287 .. 1 121 [] 138.9 9.3e-38 Spectrin 1/9 311 421 .. 1 108 [] 57.1 3.9e-13 Spectrin 2/9 431 535 .. 1 108 [] 110.0 4.6e-29 Spectrin 3/9 537 645 .. 1 108 [] 113.7 3.6e-30 Spectrin 4/9 647 751 .. 1 108 [] 138.0 1.7e-37 Spectrin 5/9 753 856 .. 1 108 [] 111.1 2.2e-29 Spectrin 6/9 858 962 .. 1 108 [] 106.6 4.9e-28 Spectrin 7/9 964 1069 .. 1 108 [] 95.7 9.1e-25 Spectrin 8/9 1071 1176 .. 1 108 [] 100.3 3.7e-26 Spectrin 9/9 1178 1282 .. 1 108 [] 73.6 4.1e-18 Alignments of top-scoring domains: CH: domain 1 of 2, from 65 to 167: score 124.9, E = 1.5e-33 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL q+k++++W+ns+la + +rit+++td++ DG+ L++L mKIAA4049 65 QKKTFTKWVNSHLAR-VS---------CRITDLYTDLR-DGRMLIKL 100 lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi l++l+++ ++k ++++r+++leN+ +al++++++ + l++++++Di mKIAA4049 101 LEVLSGERLPKPT-KGRMRIHCLENVDKALQFLKEQ-RVH-LENMGSHDI 147 vegnpdPDeklvltllwqLirrfq<-* v+gn +l+l+l+w++i+rfq mKIAA4049 148 VDGNH----RLTLGLIWTIILRFQ 167 CH: domain 2 of 2, from 184 to 287: score 138.9, E = 9.3e-38 *->qekellrWinsvlagypgnkdtlPippvritnfftdwlkDGlaLcaL ++++ll W+++++agyp+ v+i nf+t+w+ DG+a++aL mKIAA4049 184 AKDALLLWCQMKTAGYPN---------VNIHNFTTSWR-DGMAFNAL 220 lnklrPglidkkkvpslsrfdkleNlnlaldaaekeGlgiilvlidpeDi ++k+rP+lid++ +l + ++ Nl++a+++ae++ lg ++l+dpeDi mKIAA4049 221 IHKHRPDLIDFD---KLKKSNAHYNLQNAFNLAEQH-LGL-TKLLDPEDI 265 vegnpdPDeklvltllwqLirrfq<-* ++ PDek+++t++ +++++f+ mKIAA4049 266 S-VDH-PDEKSIITYVVTYYHYFS 287 Spectrin: domain 1 of 9, from 311 to 421: score 57.1, E = 3.9e-13 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ++++++ a++l++Wi+++ +l+++ ++++l +vq++l+ + +++ mKIAA4049 311 KMIEKYESLASDLLEWIEQTIIILNNRKFANSLVGVQQQLQAFNTYR 357 aelaahqqdrvdqlnelaqkLieeged...hpdseeikerleeLnerWea + ++ +++++ +l+ l ++++ +++++ +++ + ++++n++We+ mKIAA4049 358 TVEKPPKFTEKGNLEVLLFTIQSKMRAnnqKVYMPREGKLISDINKAWER 407 LlelaaeRkqkLee<-* L+++ eR+ +L++ mKIAA4049 408 LEKAEHERELALRN 421 Spectrin: domain 2 of 9, from 431 to 535: score 110.0, E = 4.6e-29 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +l ++F r+a+ e W+se ++l+s++++g Dl +v+a kkHea+e mKIAA4049 431 QLARRFDRKAAMRETWLSENQRLVSQDNFGFDLPAVEAATKKHEAIE 477 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +++aa++ +rv+++ + a++L +e+ ++d ++i++r++ + ++We Lle mKIAA4049 478 TDIAAYE-ERVQAVMAVARELEAEN--YHDIKRITARKDNVIRLWEYLLE 524 laaeRkqkLee<-* l+ +R+q+Le mKIAA4049 525 LLRARRQRLEM 535 Spectrin: domain 3 of 9, from 537 to 645: score 113.7, E = 3.6e-30 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l lq+ ++++ ++ W++e++ ll s+dygk+l +v++Ll+kH e mKIAA4049 537 LGLQKIFQEMLYIMDWMDEMKVLLLSQDYGKHLLGVEDLLQKHALVE 583 aelaahqqdrvdqlnelaqkLieeged..hpdseeikerleeLnerWeaL a++a + +rv+++n+ aqk+ ++ge +++d i++r+++ + ++++L mKIAA4049 584 ADIAIQA-ERVRGVNASAQKFATDGEGykPCDPQVIRDRVAHMEFCYQEL 632 lelaaeRkqkLee<-* ++laaeR+++Lee mKIAA4049 633 CQLAAERRARLEE 645 Spectrin: domain 4 of 9, from 647 to 751: score 138.0, E = 1.7e-37 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +l++F+++++e+e Wi+eke++lss+dygkDl+sv +Ll kH+afe mKIAA4049 647 RRLWKFFWEMAEEEGWIREKEKILSSDDYGKDLTSVMRLLSKHRAFE 693 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ ++ ++++q ++++++i+e h+ se+i+er+ ++e+W++L++ mKIAA4049 694 DEMSGRS-GHFEQAIKEGEDMIAEE--HFGSEKIRERIIYIREQWANLEQ 740 laaeRkqkLee<-* l a Rk++Lee mKIAA4049 741 LSAIRKKRLEE 751 Spectrin: domain 5 of 9, from 753 to 856: score 111.1, E = 2.2e-29 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe ll+qFq dad++++W+ ++ +++ss d g+D+ s+q+L+kkH++ mKIAA4049 753 SLLHQFQADADDIDAWMLDILKIVSSNDVGHDEYSTQSLVKKHKDVA 799 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+ +++ + +d+l e+a +L ++ h +s+++k rl++++er +++ e mKIAA4049 800 EEITNYR-PTIDTLHEQASALPQA---HAESPDVKGRLAGIEERCKEMAE 845 laaeRkqkLee<-* l+ Rkq+L++ mKIAA4049 846 LTRLRKQALQD 856 Spectrin: domain 6 of 9, from 858 to 962: score 106.6, E = 4.9e-28 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe l l++++ +ad +e+Wi+eke++l+++++++ le+++ ++++e +e mKIAA4049 858 LALYKMFSEADACELWIDEKEQWLNNMQIPEKLEDLEVIQHRFESLE 904 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle e++++ rv +n++a++L+ g hp+++ei+++++ Ln+rW + +e mKIAA4049 905 PEMNNQA-SRVAVVNQIARQLMHNG--HPSEKEIRAQQDKLNTRWSQFRE 951 laaeRkqkLee<-* l++++k +L+ mKIAA4049 952 LVDRKKDALLS 962 Spectrin: domain 7 of 9, from 964 to 1069: score 95.7, E = 9.1e-25 *->lllqqFqrdadelesWisekeallssedygk.DlesvqaLlkkHeaf l +q ++ +++e +sWi+ek + ++s++ ++Dl++v aL++k+ ++ mKIAA4049 964 LSIQNYHLECNETKSWIREKTKVIESTQDLGnDLAGVMALQRKLTGM 1010 eaelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLl e++l a++ +++++l+++a+kL +e+ ++++ +i +rl+e+ + We+++ mKIAA4049 1011 ERDLVAIE-AKLSDLQKEAEKLESEH--PDQAQAILSRLAEISDVWEEMK 1057 elaaeRkqkLee<-* + ++ R++ L e mKIAA4049 1058 TTLKNREASLGE 1069 Spectrin: domain 8 of 9, from 1071 to 1176: score 100.3, E = 3.7e-26 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe +lqqF rd+d+++sW+s +++ ++sed++++l+++++Ll++He ++ mKIAA4049 1071 SKLQQFLRDLDDFQSWLSRTQTAIASEDMPNTLTEAEKLLTQHENIK 1117 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle +e+++++ + + ++++ +++ ++d + + +++rl++L++ W +L++ mKIAA4049 1118 NEIDNYE-EDYQKMRDMGEMVTQGQTD-AQYMFLRQRLQALDTGWNELHK 1165 laaeRkqkLee<-* +++ R+++L + mKIAA4049 1166 MWENRQNLLSQ 1176 Spectrin: domain 9 of 9, from 1178 to 1282: score 73.6, E = 4.1e-18 *->lllqqFqrdadelesWisekeallssedygkDlesvqaLlkkHeafe + +qqF rd +++e+ ++ +e l+ ++++ +le+++a +kk+e+f+ mKIAA4049 1178 HAYQQFLRDTKQAEAFLNNQEYVLAHTEMPTTLEGAEAAIKKQEDFM 1224 aelaahqqdrvdqlnelaqkLieegedhpdseeikerleeLnerWeaLle + ++a++ ++++++ e++++L+++g s++i+e+++ +++r ++ +e mKIAA4049 1225 TTMDANE-EKINAVVETGRRLVSDG--NINSDRIQEKVDSIDDRHRKNRE 1271 laaeRkqkLee<-* +a e +L + mKIAA4049 1272 AASELLMRLKD 1282 //