hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg06182/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4048  ( 1363 res)   mbg06182

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PDZ      Domain present in PSD-95, Dlg, and ZO-1/2.     245.7    3.8e-69   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PDZ        1/4     263   341 ..     1    80 []    77.6  1.5e-18
PDZ        2/4     402   479 ..     1    80 []    55.0  9.4e-12
PDZ        3/4    1156  1233 ..     1    80 []    68.4  8.8e-16
PDZ        4/4    1275  1351 ..     1    80 []    51.6    1e-10

Alignments of top-scoring domains:
PDZ: domain 1 of 4, from 263 to 341: score 77.6, E = 1.5e-18
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +glGfsivg++++  ++ gi+v+s+++G++Aa +Gr     L++GD+
   mKIAA4048   263    KGLGFSIVGgkdsiygpiGIYVKSIFAGGAAAADGR-----LQEGDE 304  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                    le NG +s+ glth++a++  k+a++g     +tLtv+ +    
   mKIAA4048   305 SLELNG-ESMAGLTHQDALQKFKQAKKG----LLTLTVRTRL    341  

PDZ: domain 2 of 4, from 402 to 479: score 55.0, E = 9.4e-12
                   *->gglGfsivg........gifvssvvpGspAakaGrkslglLkvGDvI
                       glG+ + + +  +  +gifv  + pGs+A+ +Gr     L+ GD+I
   mKIAA4048   402    VGLGIGLCSipyfqcisGIFVHTLSPGSVAHLDGR-----LRCGDEI 443  

                   leVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +e+N+  +v  lt  e+  +l  + +g    +v ++v R +   
   mKIAA4048   444 VEIND-SPVHCLTLNEVYTILSHCDPG----PVPIIVSRHP    479  

PDZ: domain 3 of 4, from 1156 to 1233: score 68.4, E = 8.8e-16
                   *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl
                      +glGfs++g+ + +++ i v +v+p++ A++ G+     +++G ++l
   mKIAA4048  1156    AGLGFSLAGgadlenkVITVHRVFPNGLASQEGT-----IQKGNEVL 1197 

                   eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   ++NG +s++g+th +a+++l++a++    ++ +++ +R     
   mKIAA4048  1198 SING-KSLKGATHNDALAILRQARD---PRQAVIVTRRTT    1233 

PDZ: domain 4 of 4, from 1275 to 1351: score 51.6, E = 1e-10
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +glGfs+ g++++ ++++++ + ++++G+            +++GD+
   mKIAA4048  1275    AGLGFSLEGgkgslhgdkPLTINRIFKGTEQGEM-------VQPGDE 1314 

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   Il+  G t v+glt  ea +++k+ ++g    +vt++++R +   
   mKIAA4048  1315 ILQLAG-TAVQGLTRFEAWNVIKALPDG----PVTIVIRRTS    1351 

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