hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpm/mpm06238/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4046 ( 1319 res) mpm06238 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- CAP_GLY CAP-Gly domain 272.7 4.7e-78 2 zf-CCHC Zinc knuckle 8.3 0.41 1 DUF827 Plant protein of unknown function (DUF8 -119.3 0.99 1 Myosin_tail_1 Myosin tail -499.9 0.24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- CAP_GLY 1/2 64 129 .. 1 74 [] 139.4 6.4e-38 CAP_GLY 2/2 217 282 .. 1 74 [] 140.0 4.2e-38 DUF827 1/1 396 734 .. 1 551 [] -119.3 0.99 Myosin_tail_1 1/1 375 1103 .. 1 863 [] -499.9 0.24 zf-CCHC 1/1 1298 1315 .. 1 18 [] 8.3 0.41 Alignments of top-scoring domains: CAP_GLY: domain 1 of 2, from 64 to 129: score 139.4, E = 6.4e-38 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN +G+RV+v+g +++G++ + Get+fapG+ W+G++LDeP+ GKN mKIAA4046 64 VGERVWVNG----NKPGFIQFLGETQFAPGQ--WAGIVLDEPI-GKN 103 DGsvkGvrYFqCegpkyGiFvrpskve<-* DGsv GvrYFqCe p +GiF rpsk++ mKIAA4046 104 DGSVAGVRYFQCE-PLKGIFTRPSKLT 129 CAP_GLY: domain 2 of 2, from 217 to 282: score 140.0, E = 4.2e-38 *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN +G+RV+vgg ++ G+VR+ Getdfa+G+ W+GVELDePl GKN mKIAA4046 217 VGDRVLVGG----TKAGVVRFLGETDFAKGE--WCGVELDEPL-GKN 256 DGsvkGvrYFqCegpkyGiFvrpskve<-* DG v G+rYFqC+ pkyG+F++ kv+ mKIAA4046 257 DGAVAGTRYFQCQ-PKYGLFAPVHKVT 282 DUF827: domain 1 of 1, from 396 to 734: score -119.3, E = 0.99 *->sAPFeSVKEAVtlFGgiafWKahyatRLkklqsserrktvsfedVsd A ++ G mKIAA4046 396 ---------ALARDGH------------------------------- 402 eetELekvqkeapelKkeLenaEreklqVLkELEsTKrtveeLklkLEka ++ + ++ +++l e+a rek + L+ LE+ Kr+ve+L+ ++E mKIAA4046 403 -DQHVLELEAKMDQLRTMVEAADREKVELLNQLEEEKRKVEDLQFRVE-- 449 ekeeqqAkqdsElAklRvEEmEqGiadeASVaaktqlEVAkEryisatsE e++ + k lEV mKIAA4046 450 EES----------------------------ITKGDLEV----------- 460 LdsvKeELekvrqeynslleEKdlAlkrAEEAvlaskvvekk......ve ++v++++ + EKdlAl E A+l ++k++++ ++ mKIAA4046 461 --------ATVSEKSRIMELEKDLALRAQEVAELRRRLESSKppgdvdMS 502 e.LtkEliAtKeslEsahaaH...leAeEerigiamekdqdreayekelk ++L E++A e lE h++H+++ ++e++g+ +e mKIAA4046 503 LsLLQEISALQEKLEAIHTDHqgeMTSLKEHFGAREE------------- 539 eAeeeLqrLnqeldpELkkDlkakLdeasaeledLkeElaaykeSkikeE ++ +e+ + l + + s e+e+L++ l mKIAA4046 540 -------AFQKEIKA-----LHTATEKLSKENESLRSKL----------- 566 aevieeegeiaaqesshdimssvasitkELeeAKmnLeKaaeEek.slrs + a+++++d+++ ++ Le A ++ + a+eE+k s++ mKIAA4046 567 ---------DHANKENSDVIA---LWKSKLETAIASHQQAMEELKvSFSK 604 lveSLkqELeeeKaeleelrqREgeasiavaSLeaELsRtksEIelvksk +++ E e K +e lr + + EIe+ +sk mKIAA4046 605 GIGTDSAEFAELKTQIERLR--LDY---------------QHEIESLQSK 637 EkearEekmvElpkklqqasrEAeeaKkeAenareelrkakeEaEqakta + r A ++++ k+++ ++++ ++ mKIAA4046 638 QDSERS---------------------AHAKEMETMQAKLMKIIKEKEDS 666 lstaEkrLvaArKeiEaAKaaEklAiaeIKaLqeseesqkndeiesSprs l++++ rL+ +aE + e++ mKIAA4046 667 LEAVKARLD----------SAEDQHLVEME-------------------- 686 ItisleEyeeLskraeEaEelvnfrvaealaqvEeakeseseiLeKLEea + +++ ++++ ++ + ++ +++ +L L+++ mKIAA4046 687 -------------DTLNKLQEAEIKANSITKEL----QEKELVLTGLQDS 719 ekeieekKaaleeAl<-* ++++ K++le+ l mKIAA4046 720 LNQVNQVKETLEKEL 734 Myosin_tail_1: domain 1 of 1, from 375 to 1103: score -499.9, E = 0.24 *->dlerqkreleeqlkrkeselsqlslklEdEqalvaq.Lqkkikelea dler + +++++s + +E E+al +++ elea mKIAA4046 375 DLER------AEVAKATSH----VGEIEQELALARDgHDQHVLELEA 411 RIeELeEeLEaERaARaKaEkqRaDLsrELEeLsERLeEagGaTaaQiEl + + L +Ea a++++ +L +LEe + + e+ l mKIAA4046 412 KMDQLRTMVEA-------ADREKVELLNQLEEEKRKVED----------L 444 nkKREaELaKLRrdLEEanlqhEealatLRKKHqdainElsdQieqLqKq + E+E + + dLE a+++ + + +L mKIAA4046 445 QFRVEEESIT-KGDLEVATVSEKSRIMEL--------------------- 472 KakaEKeKsqlqaEvddlaaqldqiaKaKlnaEKkakqlEsqlsElqvKl EK+ + Ev++l+ l++ K ++ + ++ l++ +s lq Kl mKIAA4046 473 ----EKDLALRAQEVAELRRRLES-SKPPGDVDMSLSLLQE-ISALQEKL 516 dElqRqln.DltsqKsRLqsENsdLtrqleEaEaqvsqlsklKsqlesQL + + +++ ts K + + + ++++ ++ + lsk + +l s L mKIAA4046 517 EAIHTDHQgEMTSLKEHFGAREEAFQKEIKALHTATEKLSKENESLRSKL 566 EeA.kRslEEEsReRanLqaqlrnlehDlDslrEq....lEEEsEAKael ++A+k+ ++ + +++L++ + + + ++ l+ + ++++ +s++ ael mKIAA4046 567 DHAnKENSDVIALWKSKLETAIASHQQAMEELKVSfskgIGTDSAEFAEL 616 eRqLsKa....naeiqqwrsKfEsEgalraEElEElKkKlnqkisElEea q + + + + ei +++sK +sE ++a+E+E + Kl++ i E E+ mKIAA4046 617 KTQIERLrldyQHEIESLQSKQDSERSAHAKEMETMQAKLMKIIKEKEDS 666 aEaanaKcssLEKtKsRLqsElEDlqievEranaaaseLEKKqknFDKil +Ea++a+ +s+E + +e E+ ++ e E K+++ i mKIAA4046 667 LEAVKARLDSAE----------DQHLVEMEDTLNKLQEAEIKANS---IT 703 aEwKkkvdelqaEletAqreaRnlstElfrlKneleElkDqvEaLrRENK E++ k l+ + +++ + ++t mKIAA4046 704 KELQEKELVLTGLQDSLNQVNQVKET------------------------ 729 nLqdEikDLtdqLgEgGRnvHELEKarRrLEaEkdELqaALeEAEaALeq LEK++ L k+ ++ eEA mKIAA4046 730 ----------------------LEKELQTL---KEKFASTSEEA------ 748 eEsKvlRaqvElsqiRsEiERRLaEKEEEfEntRKnhqraiesLqasLaE s+ R q ++ + + KEE f +++++e L + L++ mKIAA4046 749 -VSAQTRMQDTVNKLHQ--------KEEQFN----VLSSELEKLRENLTD 785 aEaKgKa......EalRlKKKLEgdInELEiaLDhaN.....kanaea.. +EaK+K ++++++ ++ K KLE dI+E+ +++ N+++ +k+n e++ mKIAA4046 786 MEAKFKEkddredQLVKAKEKLENDIAEI-MKMSGDNssqltKMNDELrl 834 .qKnvKkyqqqvkeLQtqvEeeQRared....areqlavaERRataLqaE +++ v +q+ ++ + + Q+ + + +a+ ++ a R+ + E mKIAA4046 835 kERSVEELQLKLTKANENASFLQKSIGEvtlkAEQSQQQAARKHEEEKKE 884 lEELrvaLeqaeRaRKqAEtElaEaservneLtaqnssLiaq.KRKLEge lEE Le K+ Et ++ ++++L a+ + ++++K K E mKIAA4046 885 LEEKLLELE------KKMETSYN----QCQDLKAKYEKASSEtKTKHEEI 924 laalqsDLDEavnElkaAeERakKAqaDaarLaeELrqEQehsqklErlR l++lq L ++ lkaA+E + +++D + L ++ + + q++E mKIAA4046 925 LQNLQKMLADTEDKLKAAQEANRDLMQDMEELKTQADKAK-AAQTAEDAM 973 KqLEsqvKeLqvRLdEaEaaAlkgGKkvIqKLEaRVReLEaELdgEqRRh +E+ Ke ++ L+ +E + ++ + L++ELd+ + + mKIAA4046 974 QIMEQMTKEKTETLASLEDTKQTN------------ARLQNELDTLKENN 1011 aetqKnlRKaeRrvKELq....fQvEEDkKnlerlQDLvDKLqaKiKtyK t+ l K+ KEL + +++ EE kK +e l+++ + + + mKIAA4046 1012 LKTVEELNKS----KELLsvenQKMEEFKKEIETLKQAAAQKSQQLSA-- 1055 RQlEEaEEiaqinlsKyRkaQreLEdAEERADqAEsslnklRqreaKsRr l+E + +l + R++ + EE ++++l +++re+ R mKIAA4046 1056 --LQEENVKLAEELGRTRDEVTSHQKLEEERSVLNNQLLEMKKRESEFRK 1103 <-* mKIAA4046 - - zf-CCHC: domain 1 of 1, from 1298 to 1315: score 8.3, E = 0.41 *->rkCynCGkpGHiardCpe<-* + C C GH+a +C mKIAA4046 1298 PYCEICEMFGHWATNCND 1315 //