hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpg/mpg00593/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4044 ( 1352 res) mpg00593 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PTPc Protein tyrosine phosphatase, catalytic do 790.8 3.1e-233 2 PTPc_motif Protein tyrosine phosphatase, catalytic do 275.9 3.1e-78 2 FN3 Fibronectin type 3 domain 86.0 4.4e-21 3 IG Immunoglobulin 37.1 2.3e-06 1 MAM Domain in meprin, A5, receptor protein tyr -7.8 0.00093 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MAM 1/1 1 84 [. 1 192 [] -7.8 0.00093 IG 1/1 91 179 .. 1 58 [] 37.1 2.3e-06 FN3 1/3 181 264 .. 1 69 [] 27.7 0.0016 FN3 2/3 280 368 .. 1 69 [] 32.4 6.3e-05 FN3 3/3 382 472 .. 1 69 [] 31.9 8.6e-05 PTPc_motif 1/2 952 1053 .. 1 92 [] 168.1 8.5e-46 PTPc 1/2 799 1056 .. 1 308 [] 464.1 6.6e-135 PTPc_motif 2/2 1242 1347 .. 1 92 [] 109.0 5.2e-28 PTPc 2/2 1085 1350 .. 1 308 [] 333.7 1.2e-95 Alignments of top-scoring domains: MAM: domain 1 of 1, from 1 to 84: score -7.8, E = 0.00093 *->tsegnCdFEegndktlCgwhqdsnddtGgeWervssatrifsamsat mKIAA4044 - ----------------------------------------------- - gpnrDhttgnglGhymfvetssgkeggqtArLlSpplkenrsthCltFwY Y mKIAA4044 1 -------------------------------------------------Y 1 ymySrgGsgvgteLnvyvrpensgeqdteklvllWsrsGtqggqWlqaev + +S++++ +g+ Lnvyv+ +n+g++++ ++W++sG+++++W++ae+ mKIAA4044 2 FVSSKSNAAPGL-LNVYVK-VNNGPLGN----PIWNISGDPTRTWHRAEL 45 alstgfspqpfqVvFegtrgskgssGyIALDDIllsngpseeCgk<-* a+st f+p+++qV+Fe++++ g++Gy A+D+++++ +p C mKIAA4044 46 AIST-FWPNFYQVIFEVVTS--GHQGYLAIDEVKVLGHP---CTR 84 IG: domain 1 of 1, from 91 to 179: score 37.1, E = 2.3e-06 *->pp.vtvkeGesvtLtC.as......titWy................. ++v+v++G+ +t++C+a + + + W+++ + ++ + + + ++ mKIAA4044 91 IQnVEVNAGQFATFQCsAIgrtvagDRLWLqgidvrdaplkeikvts 137 .......LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++ ++++ n t+ D+ G Y+C+ + +g++ s + ++L V+ mKIAA4044 138 srrfiasFNVvNTTKRDA---GKYRCMICteGGVGIS-NYAELVVK 179 FN3: domain 1 of 3, from 181 to 264: score 27.7, E = 0.0016 *->PgpPsnptelrvtdvtststsdltsvtlsWepP...........ivg P+ P p +++ +v++t + ++ ++ + +++++ +v+ mKIAA4044 181 PPVPIAP--PQLASVGAT------YLWIQLNANsingdgpivarEVE 219 Yr................ytltgLkPgaepwteYefrVrAvngndaGeg< Y + ++++++++++++++y++ +L P+ teYe++V +++G g mKIAA4044 220 YCtasgswndrqpvdstsYKIGHLDPD----TEYEISVLLTRPGEGGTG 264 -* mKIAA4044 - - FN3: domain 2 of 3, from 280 to 368: score 32.4, E = 6.3e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv P+ l+v++v s+ ++t++Wep +++ ++++ +v mKIAA4044 280 MRGPRK---LEVVEVKSR------QITIRWEPFgynvtrchsynlTV 317 gYr.......................ytltgLkPgaepwteYefrVrAvn +Y +++++++++++++++++++ +++t+t+L+P+ t+ +++++ n mKIAA4044 318 HYGyqvggqeqvreevswdtdnshpqHTITNLSPY----TNVSVKLILMN 363 gndaGeg<-* G+ mKIAA4044 364 P--EGRK 368 FN3: domain 3 of 3, from 382 to 472: score 31.9, E = 8.6e-05 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... Pg+++ ++ + + l+W +P ++ i+ Y+ + mKIAA4044 382 PGAVPT---ESIQGSAFEE-----KIFLQWREPtqtygvITLYEity 420 ...........................ytltgLkPgaepwteYefrVrAv + +++ +++ + +++++++++ ++++ + + gL Pg t+Y+f++rA mKIAA4044 421 kavssfdpeidlsnqsgrvsklgnethFLFFGLYPG----TTYSFTIRAS 466 ngndaGeg<-* ++ +G g mKIAA4044 467 TA--KGFG 472 PTPc_motif: domain 1 of 2, from 952 to 1053: score 168.1, E = 8.5e-46 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +++++h+tgWpDh gvP++ ++l f+r+v+++++++ +P+vV mKIAA4044 952 EIRQFHFTGWPDH-----GVPYhaTGLLGFVRQVKSksppnagPLVV 993 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAG+GRTG+f++idi+l++ ++++ vdi+++v+elRs R +mvqteeQ mKIAA4044 994 HCSAGAGRTGCFIVIDIMLDMaeregvVDIYNCVRELRSRRVNMVQTEEQ 1043 YlFlyralle<-* Y+F+++a+le mKIAA4044 1044 YVFIHDAILE 1053 PTPc: domain 1 of 2, from 799 to 1056: score 464.1, E = 6.6e-135 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g++eE+e+ + ++ ++++a+++eNr +KNRY +i mKIAA4044 799 GFKEEYESFFEGQSA----------PWDSAKKDENR--MKNRYG-NI 832 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT ++yDh+RV+L+ ++g+ ++sDYIN nyidgy++p+ yIaTQGP+++T mKIAA4044 833 IAYDHSRVRLQMLEGD----NNSDYINGNYIDGYHRPNHYIATQGPMQET 878 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPeesltyG + DFWrMVw++++++I+M tnlvE gr+KC++YWP++++ y+ mKIAA4044 879 IYDFWRMVWHENTASIIMVTNLVEV--------GRVKCCKYWPDDTEIYK 920 ditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytnW di+Vtl+++e l+ +y+iRt+ v++ g e r+++++h+t+W mKIAA4044 921 DIKVTLIDTELLA-EYVIRTFAVEKRGI--------HEIREIRQFHFTGW 961 PDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPiv PDhgvP ++++ll fvr+v+++++ + +gP v mKIAA4044 962 PDHGVPYHATGLLGFVRQVKSKSPPN-------------------AGPLV 992 VHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTee VHCSAG+GRTG+Fi+idi+l++ e+++ vdi+++V+elRs R +mVQTee mKIAA4044 993 VHCSAGAGRTGCFIVIDIMLDMAERegvVDIYNCVRELRSRRVNMVQTEE 1042 QYiFlyraileylk<-* QY+F+++aile ++ mKIAA4044 1043 QYVFIHDAILEACL 1056 PTPc_motif: domain 2 of 2, from 1242 to 1347: score 109.0, E = 5.2e-28 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk..........P +v +++++gWp + +P ++ s+l+++r+v k +++ +++++ mKIAA4044 1242 MVQQFQFLGWPMY----RDTPVskRSFLKLIRQVDKwqeeynggegR 1284 ivVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqt +vVHC +G GR+Gtf+ai+i++++ +++++vd+f vk lR+ +p+mv mKIAA4044 1285 TVVHCLNGGGRSGTFCAISIVCEMlrhqrtVDVFHAVKTLRNNKPNMVDL 1334 eeQYlFlyralle<-* ++QY+F+y++ le mKIAA4044 1335 LDQYKFCYEVALE 1347 PTPc: domain 2 of 2, from 1085 to 1350: score 333.7, E = 1.2e-95 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi +++eEf +l ++tp+++++ +c++a lp N+ eKNR di mKIAA4044 1085 QIKEEFRTLNMVTPTLRVE------DCSIALLPRNH--EKNRCM-DI 1122 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT lp D++ L +dg e+s+YINA +d+yk+p a+I+TQ+PLp+T mKIAA4044 1123 LPPDRCLPFLITIDG-----ESSNYINAALMDSYKQPSAFIVTQHPLPNT 1167 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty v DFWr V +++++++VML++ + C qYWPe++ + mKIAA4044 1168 VKDFWRLVLDYHCTSVVMLNDVDPA----------QLCPQYWPENgVHRH 1207 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G i+V++vs + + d++ R +++ n + + + +r+V ++++ + mKIAA4044 1208 GPIQVEFVSADLEE-DIISRIFRIYNASRPQ------DGHRMVQQFQFLG 1250 WPDh.gvPespkslldfvrlvrksqssspnssenivssnskyagtspsgP WP +++P s +s+l+++r+v+k+q+ +++ +g mKIAA4044 1251 WPMYrDTPVSKRSFLKLIRQVDKWQEEYNGG----------------EGR 1284 ivVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQT +vVHC +G GR+GTF+ai+i++++l+++++vd+f Vk+lR+ p+mV+ mKIAA4044 1285 TVVHCLNGGGRSGTFCAISIVCEMLRHqrtVDVFHAVKTLRNNKPNMVDL 1334 eeQYiFlyraileylk<-* ++QY+F+y+++leyl mKIAA4044 1335 LDQYKFCYEVALEYLN 1350 //