hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/Pfam Sequence file: /cdna4/rodent/full/goal/mpg/mpg00593/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4044 ( 1352 res) mpg00593 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- Y_phosphatase Protein-tyrosine phosphatase 776.2 1.3e-229 2 fn3 Fibronectin type III domain 80.8 2.8e-20 3 ig Immunoglobulin domain 28.9 0.00012 1 I-set Immunoglobulin I-set domain -1.4 0.016 1 MAM MAM domain -4.1 0.0032 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- MAM 1/1 2 84 .. 1 180 [] -4.1 0.0032 ig 1/1 99 162 .. 1 65 [] 28.9 0.00012 I-set 1/1 86 179 .. 1 97 [] -1.4 0.016 fn3 1/3 181 267 .. 1 84 [] 34.3 2.8e-06 fn3 2/3 279 370 .. 1 84 [] 11.8 0.11 fn3 3/3 382 475 .. 1 84 [] 43.5 4.8e-09 Y_phosphatase 1/2 823 1053 .. 1 275 [] 448.6 5.4e-131 Y_phosphatase 2/2 1113 1347 .. 1 275 [] 335.5 6.1e-97 Alignments of top-scoring domains: MAM: domain 1 of 1, from 2 to 84: score -4.1, E = 0.0032 *->CdFdwdEeedhPlCgWtqdstdgfdgWtrqsgatptsstGPpgDHtm F mKIAA4044 2 --F-------------------------------------------- 2 fqnngsGhYmyvetsdlgqeGqkArLlSPplsppgsacClsFwYhmyGsg v ++ ++ a mKIAA4044 3 -----------VSSK------------------SNAA------------- 10 ksvgtLnvyvreegesekdpvllWsrsGsqgpnWleaevtvnllksekpf +g Lnvyv+++++++++p +W++sG++++ W++ae+++ ++++++ + mKIAA4044 11 --PGLLNVYVKVNNGPLGNP--IWNISGDPTRTWHRAELAI-STFWPNFY 55 qviFEgvrglpgsaGdIAlDDIsindis.gpCpe<-* qviFE+v + g++G+ A+D+++ + ++pC + mKIAA4044 56 QVIFEVVTS--GHQGYLAIDEVK---VLgHPCTR 84 ig: domain 1 of 1, from 99 to 162: score 28.9, E = 0.00012 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +t++Cs+ ++++ + Wl++ + + ++++ + + + mKIAA4044 99 GQFATFQCSAI-GRTVAGDRLWLQGIDvRDaPLKEIKVTSSRRFIAS 144 tsLtitnvtpeDggtYtCvv<-* +++ n+t+ D+g Y+C+ mKIAA4044 145 --FNVVNTTKRDAGKYRCMI 162 I-set: domain 1 of 1, from 86 to 179: score -1.4, E = 0.016 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVs....WfKd....Gq P+F+++ ++veV+ G+ a+f+C ++G tV +++ W+ + + ++ mKIAA4044 86 PHFLRI-QNVEVNAGQFATFQCSAIGR---TVAgdrlWLQGidvrDA 128 plssvllpsdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGe.a pl++ +kvt + + ++++ + n +++D+GkY+C ++G + mKIAA4044 129 PLKE-------IKVTSSR-RFIASFNVVNTTKRDAGKYRCMICTEGGVgI 170 easaeLtVq<-* + aeL V+ mKIAA4044 171 SNYAELVVK 179 fn3: domain 1 of 3, from 181 to 267: score 34.3, E = 2.8e-06 *->PsaP.tnltvtdvtstsltlsWsppt..gngpitgYevtyRqpkngg P+ P ++ +v++t+l ++ ++ + +g+gpi ev+y +++ +g mKIAA4044 181 PPVPiAPPQLASVGATYLWIQLNANSinGDGPIVAREVEY-CTA-SG 225 ewneltvpgtttsytltgLkPgteYevrVq.AvnggG..GpeS<-* +wn ++ +t sy + L P+teYe++V ++ g+G++G + mKIAA4044 226 SWNDRQPVDST-SYKIGHLDPDTEYEISVLlTRPGEGgtGSPG 267 fn3: domain 2 of 3, from 279 to 370: score 11.8, E = 0.11 *->P.saPtnltvtdvtstsltlsWspptgngpit...gYevtyR..qpk P P+ l v +v s +t++W+p + +t+ ++Y++t++ ++++ mKIAA4044 279 PmRGPRKLEVVEVKSRQITIRWEPF--GYNVTrchSYNLTVHygYQV 323 nggewneltvpgt...tt.sytltgLkPgteYevrVqAvnggGGpeS<-* +g+e ++ v+++++++++++t+t+L P+t+ +v+++ n +G +eS mKIAA4044 324 GGQEQVREEVSWDtdnSHpQHTITNLSPYTNVSVKLILMNPEGRKES 370 fn3: domain 3 of 3, from 382 to 475: score 43.5, E = 4.8e-09 *->PsaPtnltvtdv.tstsltlsWsppt.gngpitgYevtyRqpkngge P+a+ ++ + + + l+W pt+ g+it Ye+ty + +++ mKIAA4044 382 PGAVPTESIQGSaFEEKIFLQWREPTqTYGVITLYEITY-KAVSSF- 426 wneltvpgt.........ttsytltgLkPgteYevrVqAvnggG.GpeS< + e+++++++++ ++ +++t++ + gL Pgt+Y+++++A +++G Gp+ mKIAA4044 427 DPEIDLSNQsgrvsklgnETHFLFFGLYPGTTYSFTIRASTAKGfGPPA 475 -* mKIAA4044 - - Y_phosphatase: domain 1 of 2, from 823 to 1053: score 448.6, E = 5.4e-131 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAnyidgpivrllvv N++KNRy +i++yDh+RV+L+ ++gd++sDYIN nyidg mKIAA4044 823 NRMKNRYGNIIAYDHSRVRLQMLEGDNNSDYINGNYIDG-------- 861 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y++p++yIaTQgP+++Ti DFWrMvw++++++I+M+t+lvE gr +K C mKIAA4044 862 YHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGR--VK-C 908 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskila +YWP+ +++ y+di+Vtl+++e +a+y++Rt+ ++++g mKIAA4044 909 CKYWPD-----DTEIYKDIKVTLIDTELLAEYVIRTFAVEKrGI------ 947 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e r++++fh+tgWPDhgvP + +++ll ++r+v++++p mKIAA4044 948 -----HEIREIRQFHFTGWPDHGVPYH-ATGLLGFVRQVKSKSP------ 985 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf p++g P vVHCSAG+GRTG+fi+idi+l++ e+eg+v d++ mKIAA4044 986 ---PNAG-------PLVVHCSAGAGRTGCFIVIDIMLDMAEREGVV-DIY 1024 diVkelRsqRpgmVQteeQYiFlydaile<-* ++V+elRs R +mVQteeQY+F++daile mKIAA4044 1025 NCVRELRSRRVNMVQTEEQYVFIHDAILE 1053 Y_phosphatase: domain 2 of 2, from 1113 to 1347: score 335.5, E = 6.1e-97 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAnyidgpivrllvv N+eKNR dilp D++ L i ++e+s+YINA +d+ mKIAA4044 1113 NHEKNRCMDILPPDRCLPFLITI-DGESSNYINAALMDS-------- 1150 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC yk+p a+I+TQ+PlpnT++DFWr v+++++t++VML++++ + C mKIAA4044 1151 YKQPSAFIVTQHPLPNTVKDFWRLVLDYHCTSVVMLNDVDPAQL-----C 1195 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskila +qYWPe +g ++G+i+V+ vs + e+d++ R ++++n +++ mKIAA4044 1196 PQYWPE----NGVHRHGPIQVEFVSADLEEDIISRIFRIYNaSRPQ---- 1237 kqekkgetrtVthfhytgWPDh.gvPesgpkslldllrkvrksqpsnvel + r+V++f+++gWP ++++P s+ +s+l+l+r+v k+q+ mKIAA4044 1238 -----DGHRMVQQFQFLGWPMYrDTPVSK-RSFLKLIRQVDKWQE----- 1276 gerspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidv e++++ g +vVHC +G GR+Gtf+ai+i++++l++ +v dv mKIAA4044 1277 -EYNGGEG-------RTVVHCLNGGGRSGTFCAISIVCEMLRHQRTV-DV 1317 fdiVkelRsqRpgmVQteeQYiFlydaile<-* f++Vk+lR+ p+mV+ ++QY+F+y++ le mKIAA4044 1318 FHAVKTLRNNKPNMVDLLDQYKFCYEVALE 1347 //