hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mic/mic35030/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4043  ( 522 res)   mic35030

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BBOX     B-Box-type zinc finger, protein interaction     70.1    2.7e-16   2
RING     Ring finger                                     29.9    0.00036   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
RING       1/1      39   189 ..     1    23 []    29.9  0.00036
BBOX       1/2     230   280 ..     1    51 []    32.0  7.9e-05
BBOX       2/2     317   359 ..     1    51 []    46.0  4.8e-09

Alignments of top-scoring domains:
RING: domain 1 of 1, from 39 to 189: score 29.9, E = 0.00036
                   *->CpICle....pvvlpCgH.FCr.Ci......................
                      Cp+C +  ++p++lpC H+ C +C ++   ++++++++ +++   ++
   mKIAA4043    39    CPVCGSlfrePIILPCSHnVCLpCArtiavqtpdgeqhlppplllsr 85   

                   ..................................................
                   +     ++++++   + ++++ + ++ ++ +++ ++++++ ++ +  +++
   mKIAA4043    86 gaaaaatppdqdaaagatsggagantagglgggatgggdhadklslyset 135  

                   ..................................................
                   +++ ++ +++ +++++ +  +  + +++++    ++   ++  +++++ +
   mKIAA4043   136 dsgygsytpslkspngvrvlpmvpappgssaaaargaacsslcsssssit 185  

                   CPlC<-*
                   CP+C   
   mKIAA4043   186 CPQC    189  

BBOX: domain 1 of 2, from 230 to 280: score 32.0, E = 7.9e-05
                   *->eraplCeeHgd..eepaeffCveedgallCrdCdeageHqanklfrg
                       ++  C+ ++ ++ epa   C e++++l+C++C +  +H+ +++f++
   mKIAA4043   230    PAVAICQLCDRtpPEPAATLC-EQCDVLYCATCQLK-CHPSRGPFAK 274  

                   Hrvvll<-*
                   Hr v     
   mKIAA4043   275 HRLVQP    280  

BBOX: domain 2 of 2, from 317 to 359: score 46.0, E = 4.8e-09
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      ++ p C+eH+  e   ++C ++++++ C+ C e+g H      ++H+
   mKIAA4043   317    RKFPTCPEHE-MENYSMYC-VSCRSPVCYMCLEEGRH------SKHE 355  

                   vvll<-*
                   v++l   
   mKIAA4043   356 VKPL    359  

//