hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mic/mic35030/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4043  ( 522 res)   mic35030

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
zf-B_box B-box zinc finger                               42.2    1.2e-08   2
zf-C3HC4 Zinc finger, C3HC4 type (RING finger)           15.8      0.023   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
zf-C3HC4   1/1      39    75 ..     1    50 []    15.8    0.023
zf-B_box   1/2     232   280 ..     1    46 []     7.8     0.11
zf-B_box   2/2     319   359 ..     1    46 []    42.5  9.2e-09

Alignments of top-scoring domains:
zf-C3HC4: domain 1 of 1, from 39 to 75: score 15.8, E = 0.023
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlss..sgnt
                      C++C   + ep      ilpC H      +C +C ++   ++++g++
   mKIAA4043    39    CPVCGSLFREPI-----ILPCSHN-----VCLPCARTIAVQtpDGEQ 75   

                   tCplC<-*
                           
   mKIAA4043     - -----    -    

zf-B_box: domain 1 of 2, from 232 to 280: score 7.8, E = 0.11
                   *->ervCpeHg....ekaslfCedDqalLCvvCdesgeHsanklargHtv
                         C+ ++++++e+a   Ce+++ l C +C++   H   + +++H+ 
   mKIAA4043   232    VAICQLCDrtppEPAATLCEQCDVLYCATCQLK-CHPSRGPFAKHRL 277  

                   vpl<-*
                   v     
   mKIAA4043   278 VQP    280  

zf-B_box: domain 2 of 2, from 319 to 359: score 42.5, E = 9.2e-09
                   *->ervCpeHg.ekaslfCedDqalLCvvCdesgeHsanklargHtvvpl
                       + CpeH+ e  s++C+ ++ + C +C e g+H      ++H v+pl
   mKIAA4043   319    FPTCPEHEmENYSMYCVSCRSPVCYMCLEEGRH------SKHEVKPL 359  

                   <-*
                      
   mKIAA4043     -     -    

//