hmmpfam - search a single seq against HMM database HMMER 2.1.1 (Dec 1998) Copyright (C) 1992-1998 Washington University School of Medicine HMMER is freely distributed under the GNU General Public License (GPL). - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data11/genetics/InterProScan/iprscan/data/smart.HMMs Sequence file: /cdna4/rodent/full/goal/mpf/mpf01333/w3open/interpro/cnk_1/seq.in - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: mKIAA4041 ( 1671 res) mpf01333 Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- LamG Laminin G domain 211.8 6.1e-59 2 GPS G-protein-coupled receptor proteolytic site 88.4 8.6e-22 1 EGF_CA Calcium-binding EGF-like domain 87.0 2.3e-21 5 HormR Domain present in hormone receptors 82.7 4.4e-20 1 EGF Epidermal growth factor-like domain. 78.5 8.5e-19 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- EGF 1/7 14 47 .. 1 32 [] 25.5 0.0074 EGF_CA 1/5 11 47 .. 1 34 [] 32.4 6.1e-05 EGF 2/7 54 89 .. 1 32 [] 28.0 0.0013 EGF_CA 2/5 55 89 .. 1 34 [] 24.4 0.0016 LamG 1/2 110 277 .. 1 137 [] 125.9 4.3e-33 EGF 3/7 300 333 .. 1 32 [] 28.6 0.00084 EGF_CA 3/5 297 333 .. 1 34 [] 32.5 5.9e-05 LamG 2/2 359 497 .. 1 137 [] 87.2 1.9e-21 EGF 4/7 523 556 .. 1 32 [] 30.4 0.00024 EGF_CA 4/5 519 556 .. 1 34 [] 25.8 0.0011 EGF 5/7 558 594 .. 1 32 [] 25.5 0.0076 EGF_CA 5/5 557 594 .. 1 34 [] 3.0 0.71 EGF 6/7 600 649 .. 1 32 [] -6.3 9e+02 EGF 7/7 650 697 .. 1 32 [] -6.0 8.4e+02 HormR 1/1 699 761 .. 1 89 [] 82.7 4.4e-20 GPS 1/1 1055 1108 .. 1 51 [] 88.4 8.6e-22 Alignments of top-scoring domains: EGF: domain 1 of 7, from 14 to 47: score 25.5, E = 0.0074 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C ++pC+ + G+C++++++ytC+C + +tg++C+ mKIAA4041 14 LCYsnPCGAN-----GRCRsregGYTCeCF-EDFTGeHCQ 47 EGF_CA: domain 1 of 5, from 11 to 47: score 32.4, E = 6.1e-05 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* iD C ++pC+ +G +C+ ++G+Y+C+C + +t+ +C+ mKIAA4041 11 EIDLCysnPCGANG---RCRSrEGGYTCeCFEDFTgEHCQ 47 EGF: domain 2 of 7, from 54 to 89: score 28.0, E = 0.0013 *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg..rCe<-* Ca++ C nG GtC++ ++++C Cp pG + +++Ce mKIAA4041 54 RCAsgVCKNG-----GTCVnlligGFHCvCP-PGEYEhpYCE 89 EGF_CA: domain 2 of 5, from 55 to 89: score 24.4, E = 0.0016 *->DiDEC...pCqnGGptgtCiN..vGSYrC.CppGyt..rnCe<-* C +++C nGG tC+N +G+++C CppG + ++ Ce mKIAA4041 55 ----CasgVCKNGG---TCVNllIGGFHCvCPPGEYehPYCE 89 LamG: domain 1 of 2, from 110 to 277: score 125.9, E = 4.3e-33 *->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv ++++s+ F T+ n+lLly+g+ ++++df+ale+v + +l+ mKIAA4041 110 FhFTVSLAFATQDRNALLLYNGrfneKHDFIALEIV------EEQLQ 150 lrydlGssttggparltsdsdrptplnDGqWHrVsvern........... l+++ G+ +++++t++ p ++DG+WH+V v+++++++ ++ + + mKIAA4041 151 LTFSAGE----TTTTVTPQV--PGGVSDGRWHSVLVQYYnkpnighlglp 194 .....grsvtLsVDggnpvsges....................t.Ldldk +++++++ ++++VD+++ ++++ ++ ++ + ++++++++++Ldl+ mKIAA4041 195 hgpsgEKVAVVTVDDCDAAVAVHfgsyvgnyscaaqgtqsgskKsLDLT- 243 eesgplylGGlPe.....lpvspgFrGCirnlrvngk<-* gpl lGG+P+ +++ + s F+GC+rnl+++g+ mKIAA4041 244 ---GPLLLGGVPNlpedfPVHSRQFVGCMRNLSIDGR 277 EGF: domain 3 of 7, from 300 to 333: score 28.6, E = 0.00084 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* C+++ C+nG GtC+++ ++y C+Cp + g++Ce mKIAA4041 300 FCDgtSCQNG-----GTCVnrwnTYLCeCP-LRFGGkNCE 333 EGF_CA: domain 3 of 5, from 297 to 333: score 32.5, E = 5.9e-05 *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* + C+++ CqnGG tC+N+ + Y C+Cp + ++nCe mKIAA4041 297 QRNFCdgtSCQNGG---TCVNrWNTYLCeCPLRFGgKNCE 333 LamG: domain 2 of 2, from 359 to 497: score 87.2, E = 1.9e-21 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr ++++ ++FrT++++G+L+ a+ ++++ l l++ + +++++ mKIAA4041 359 VpWYLGLMFRTRKEDGVLMEATagTSSRLHLQIL------NSYIRFE 399 ydlGssttggparltsdsdrptplnDGqWHrVsvern........grsvt ++ G s ++a+++ + ++ DG WH++ +e + +++++ + ++ mKIAA4041 400 VSYGPS---DVASMQLSK---SRITDGGWHHLLIELRsakegkdiKYLAV 443 LsVDggnpvsges.....t.LdldkeesgplylGGlPe..lpvspgFrGC +++D g +s++ +++ ++L++ + +GG+ e+++ v++gFrGC mKIAA4041 444 MTLDYGMDQSTVQignqlPgLKMR-----TIVIGGVTEdkVSVRHGFRGC 488 irnlrvngk<-* ++++r+ + mKIAA4041 489 MQGVRMGET 497 EGF: domain 4 of 7, from 523 to 556: score 30.4, E = 0.00024 *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-* +Ca++pC ++ +C+++ +sy+C C Gy g+ C+ mKIAA4041 523 PCAssPCPPHS-----HCRdtwdSYSCiCD-RGYFGkKCV 556 EGF_CA: domain 4 of 5, from 519 to 556: score 25.8, E = 0.0011 *->Di.DEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-* D++D C ++pC++++ +C+++ SY+C C+ Gy ++ C+ mKIAA4041 519 DVeDPCassPCPPHS---HCRDtWDSYSCiCDRGYFgKKCV 556 [output cut off at A = 10 top alignments] //