hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mid/mid20034/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4039  ( 488 res)   mid20034

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TY       Thyroglobulin type I repeats.                   72.5    5.2e-17   1
KAZAL    Kazal type serine protease inhibitors           52.7    4.7e-11   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
KAZAL      1/1     190   235 ..     1    58 []    52.7  4.7e-11
TY         1/1     390   436 ..     1    58 []    72.5  5.2e-17

Alignments of top-scoring domains:
KAZAL: domain 1 of 1, from 190 to 235: score 52.7, E = 4.7e-11
                   *->dCseyrsptsggllaCpre.ydPVCGsDGvTYsNeCeLcaaaCeaeq
                       C+            Cp    +PVCGsDG+ Ys+ C L+ +aC    
   mKIAA4039   190    TCK-----------PCPIAyASPVCGSDGHSYSSQCKLEYQACV--L 223  

                   gksievkhdGpC<-*
                   gk+i++k++G+C   
   mKIAA4039   224 GKQISIKCEGRC    235  

TY: domain 1 of 1, from 390 to 436: score 72.5, E = 5.2e-17
                   *->iPqCdedGnYepvQCdgssggkRGqCWCVDpasGreipGtRtepGia
                      iP CdedG+Y+p+QC+gs     GqCWCVD ++G+e+ G+R      
   mKIAA4039   390    IPLCDEDGYYKPTQCHGSV----GQCWCVD-RYGNEVVGSR------ 425  

                   pggdpdCpspc<-*
                   ++g +dC       
   mKIAA4039   426 INGVADCAIDF    436  

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