hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid20034/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mKIAA4039  ( 488 res)   mid20034

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
Thyroglobulin_1 Thyroglobulin type-1 repeat              69.0    9.7e-17   1
Kazal_2         Kazal-type serine protease inhibitor     57.0    4.2e-13   1
Kazal_1         Kazal-type serine protease inhibitor     38.5    1.5e-07   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
Kazal_1           1/1     191   235 ..     1    61 []    38.5  1.5e-07
Kazal_2           1/1     190   235 ..     1    61 []    57.0  4.2e-13
Thyroglobulin_1   1/1     369   432 ..     1    81 []    69.0  9.7e-17

Alignments of top-scoring domains:
Kazal_1: domain 1 of 1, from 191 to 235: score 38.5, E = 1.5e-07
                   *->CsrypnptskDGklvaCp.reydPVCGsDGvTYsNECeLkkaaCaen
                      C+              Cp +  +PVCGsDG+ Ys+ C L+  aC   
   mKIAA4039   191    CKP-------------CPiAYASPVCGSDGHSYSSQCKLEYQAC--- 221  

                   veqgtniekkhdGpC<-*
                      g++i++k  G+C   
   mKIAA4039   222 -VLGKQISIKCEGRC    235  

Kazal_2: domain 1 of 1, from 190 to 235: score 57.0, E = 4.2e-13
                   *->eCseyrsqvrNGlaCpreegydPVCGsDGckTYsNeCalgcanCkag
                      +C+           Cp ++  +PVCGsDG + Ys++C+l+ ++C +g
   mKIAA4039   190    TCK----------PCPIAY-ASPVCGSDG-HSYSSQCKLEYQACVLG 224  

                   flegelrlkydGeC<-*
                      +++++k++G+C   
   mKIAA4039   225 ---KQISIKCEGRC    235  

Thyroglobulin_1: domain 1 of 1, from 369 to 432: score 69.0, E = 9.7e-17
                   *->CqrelervleslaaeqlkteehlesprglYvPnCdenGfYkpvQCdp
                      C  el+ ++ + +         + ++ g Y+P Cde+G Ykp QC++
   mKIAA4039   369    CHTELSNIQKRQG---------IKKLLGQYIPLCDEDGYYKPTQCHG 406  

                   SlggqrGeCWCVDaetGkelpGtrdvgGetPprC<-*
                       + G+CWCVD++ G e+ G+ +++G   ++C   
   mKIAA4039   407 ----SVGQCWCVDRY-GNEVVGS-RINGV--ADC    432  

//