hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mie/mie24050/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4038  ( 356 res)   mie24050

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
Peptidase_C12 Ubiquitin carboxyl-terminal hydrolase,    425.3   5.5e-124   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
Peptidase_C12   1/1      35   239 ..     1   225 []   425.3 5.5e-124

Alignments of top-scoring domains:
Peptidase_C12: domain 1 of 1, from 35 to 239: score 425.3, E = 5.5e-124
                   *->rWlpLESnPgVfTelieklGvkgdEvqveDvysLddElLemiprPvh
                      +W+++ES+PgVfTeli+++G++g  +qve+++sL++E+ ++ ++Pvh
   mKIAA4038    35    EWCLMESDPGVFTELIKGFGCRG--AQVEEIWSLEPES-FEKLKPVH 78   

                   AlIFLFpwtekveekrkeepkgikvqdsdvsdsvFFaKQtIpNACGTqAL
                   +lIFLF+w+ +      eep+g++vqds + +++FFaKQ+I+NAC+TqA+
   mKIAA4038    79 GLIFLFKWQPG------EEPAGSVVQDS-RLETIFFAKQVINNACATQAI 121  

                   LHaLlNnedeidvdlGstLkrFleftkdlsPeeRgkaLeNseeiraaHNS
                   +++LlN++ ++dv+lG+tL++F+ef+++++  ++g+aL+Ns+ ir++HNS
   mKIAA4038   122 VSVLLNCT-HQDVHLGETLSEFKEFSQSFDAAMKGLALSNSDVIRQVHNS 170  

                   faraqegqteekeaaGlSvrdedvnyHFIayVpinGtLYELDGrkegPin
                   far+q++++++k+ a     +e++++HF++yVp+nG+LYELDG++egPi+
   mKIAA4038   171 FARQQMFEFDTKTPA-----KEEDAFHFVSYVPVNGRLYELDGLREGPID 215  

                   hGetsetaTdtllkDavrpVikermery<-*
                   +G++++    ++++ avrpVi++r+++y   
   mKIAA4038   216 LGACNQ----DDWITAVRPVIEKRIQKY    239  

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