hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mid/mid20012/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4036  ( 629 res)   mid20012

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
EMP70    Endomembrane protein 70                        884.2   3.9e-262   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
EMP70      1/1      96   587 ..     1   607 []   884.2 3.9e-262

Alignments of top-scoring domains:
EMP70: domain 1 of 1, from 96 to 587: score 884.2, E = 3.9e-262
                   *->epYeYYserLpFCrPekgtiekksEsLGYEVLfGDRivnSpYklkfl
                      e+Y Y+s  LpFC ++k +i++++E+LG E L+G ++++S   +kf+
   mKIAA4036    96    ETYKYFS--LPFCVGSKKSISHYHETLG-EALQGVELEFSGLDIKFK 139  

                   eekecevlCkvkkypldkltkedvklfrkaIekeYyvqwliDnLPvatfv
                   ++++  ++C+        l+ke+  +f +aI++ Y++q++iD+LP+++ v
   mKIAA4036   140 DDVMPGTYCEI------DLDKEKRDAFVYAIKNHYWYQMYIDDLPIWGIV 183  

                   gkvdnkdykgvgfesGfplGeqgidieAcplnnlyKteeKyylfnHldfv
                   g+ d+                                 e yyl++ ++++
   mKIAA4036   184 GEADE-------------------------------NGEDYYLWTYKKLE 202  

                   ieYHdrdndddqlesyRivgieVkprSvkhsselkndestCsltskysss
                   i ++    ++      Riv++++++                       + 
   mKIAA4036   203 IGFN----GN------RIVDVNLTS-----------------------EG 219  

                   pqeldEgkendgEleltFTYSVkWkesdvkWasRWDkYLdsgffDmhdlq
                    + l ++++      ++ +YSVkWk+sdvk++ R+DkYLd++ff +h  +
   mKIAA4036   220 KVKLVPNTK------IQMSYSVKWKKSDVKFEDRFDKYLDPSFF-QH--R 260  

                   IHWFSIiNSlviVlFLsGiVsmIlmRTLrrDiarYneldedeeaeGIEte
                   IHWFSI+NS+++V+FL+G+VsmIlmRTLr+D+arY++++e++        
   mKIAA4036   261 IHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEEMD-------- 302  

                   DDlddDaqEEsGWKLVHGDVFRpPrPNLFnpmLLSalvGsGvQlllmvlv
                    D+d+D  +E+GWK+VHGDVFRp +     p+++S l+GsG+Q+++++l+
   mKIAA4036   303 -DMDRDLGDEYGWKQVHGDVFRPSS----HPLIFSSLIGSGCQIFAVSLI 347  

                   tivfAclGfLsPsnRGsLlTaaivlYaltGfvAGYvSarlYktfkGkrkk
                   +i+ A+   L+++ RGs+l++ai++Ya t++v+GY++++lY + +G+  +
   mKIAA4036   348 VIIVAMIEDLYTE-RGSMLSTAIFVYAATSPVNGYFGGSLYARQGGR--R 394  

                   WkrnliLTaflfPGivFliffvLNfvlWgkgSSgAvPFgTmvaLlllWfl
                   W+++++  afl P+ v++++f++Nf+++ +++S+A+PFgTmva+ +++f+
   mKIAA4036   395 WIKQMFIGAFLIPAMVCGTAFFINFIAIYYHASRAIPFGTMVAVCCICFF 444  

                   vsvPLtflGgivGfNIPLPQRkragefehPvRTNqIPRqIPeRqkWYlsp
                   v++PL ++G+i+G       R+++g++++P+R+N +PR+IPe +kW ++p
   mKIAA4036   445 VILPLNLVGTILG-------RNLSGQPNFPCRVNAVPRPIPE-KKWFMEP 486  

                   lpgilmGGiLPFGaIfIELfFIftSlWlhkTTiYYmFGFLFlVFiILvvv
                    +++ +GGiLPFG+IfIE++FIftS+W++k  iYY++GF+ lV +IL++v
   mKIAA4036   487 AVIVCLGGILPFGSIFIEMYFIFTSFWAYK--IYYVYGFMMLVLVILCIV 534  

                   csevtIvlTYFqLRFCaEDKVVRYrWWWRSFltsGfStAvYvFlYSifYf
                   +++vtIv+TYF+L  +aED    YrW+W+SFl+++ StA+Yv+ YS++Y+
   mKIAA4036   535 TVCVTIVCTYFLL--NAED----YRWQWTSFLSAA-STAIYVYMYSFYYY 577  

                   ftKlkisGfi<-*
                   f+K+k+ G++   
   mKIAA4036   578 FFKTKMYGLF    587  

//