hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21043/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4034  ( 1554 res)   mbg21043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
BRIGHT   BRIGHT, ARID (A/T-rich interaction domain) d   132.6    4.2e-35   1
PHD      PHD zinc finger                                101.7    8.2e-26   2
JmjN     Small domain found in the jumonji family of     82.1    6.6e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      68   109 ..     1    45 []    82.1  6.6e-20
BRIGHT     1/1     135   225 ..     1    95 []   132.6  4.2e-35
PHD        1/2     348   394 ..     1    39 []    61.5    1e-13
PHD        2/2    1215  1259 ..     1    39 []    48.2  1.1e-09

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 68 to 109: score 82.1, E = 6.6e-20
                   *->eiPvfyPteeEFkDplaYIskIrpqgGeAekyGIvKvVPPknWkP<-
                      e+Pvf+P++eEF Dp+a+I+kIrp   +Ae  GI+Kv PP++W+P  
   mKIAA4034    68    ECPVFEPSWEEFADPFAFIHKIRP---IAEQTGICKVRPPPDWQP   109  

                   *
                    
   mKIAA4034     -   -    

BRIGHT: domain 1 of 1, from 135 to 225: score 132.6, E = 4.2e-35
                   *->rerelFldrLykFmeergtpilkiPviggkpklDLyrLyrlVkerGG
                      r + +Fld++ k++e +g+ +lkiP++++k+ lDL++L +lV e+GG
   mKIAA4034   135    RVKLNFLDQIAKYWELQGS-TLKIPHVERKI-LDLFQLNKLVAEEGG 179  

                   ydaVtkdkkWkeiaeelgipdtistsasssLrkhYlryLlpfEeflrg<-
                   +++V+kd+kW++ia+++g+ +  +++++s++r hY+r+L+p+  fl+g  
   mKIAA4034   180 FAVVCKDRKWTKIATKMGFAP--GKAVGSHIRGHYERILNPYNLFLSG   225  

                   *
                    
   mKIAA4034     -   -    

PHD: domain 1 of 2, from 348 to 394: score 61.5, E = 1e-13
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C +Cg+++++++ll+Cd gCd++yH+ Cl ppl+++p+g+w+Cp+C
   mKIAA4034   348    VClLCGSgndeDrLLLCD-GCDDSYHTfCLVPPLHdVPKGdWRCPKC 393  

                   k<-*
                   +   
   mKIAA4034   394 L    394  

PHD: domain 2 of 2, from 1215 to 1259: score 48.2, E = 1.1e-09
                   *->yCvCgk...g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprCk<
                      +C+C+k++  +++qC+  C++++H++C+  p  +  +  w+Cp+C+ 
   mKIAA4034  1215    VCLCQKtpaTpMIQCE-LCRDAFHTsCVAAPSIsQSSRiWLCPHCR  1259 

                   -*
                     
   mKIAA4034     -    -    

//