hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21043/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4034  ( 1554 res)   mbg21043

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
JmjC     JmjC domain                                    225.0    1.1e-63   1
ARID     ARID/BRIGHT DNA binding domain                 120.2      4e-32   1
zf-C5HC2 C5HC2 zinc finger                              113.9    3.1e-30   1
PHD      PHD-finger                                     110.9    2.5e-29   2
JmjN     jmjN domain                                     94.0      3e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
JmjN       1/1      68   114 ..     1    55 []    94.0    3e-24
ARID       1/1     131   239 ..     1   116 []   120.2    4e-32
PHD        1/2     348   396 ..     1    51 []    68.7  1.2e-16
JmjC       1/1     523   639 ..     1   126 []   225.0  1.1e-63
zf-C5HC2   1/1     729   782 ..     1    59 []   113.9  3.1e-30
PHD        2/2    1215  1261 ..     1    51 []    49.9  5.6e-11

Alignments of top-scoring domains:
JmjN: domain 1 of 1, from 68 to 114: score 94.0, E = 3e-24
                   *->eiPvFyPtmeEFeDplaYIakIHirpgAekyGivKVvPPkeWLELLE
                      e+PvF+P++eEF+Dp a+I k  irp Ae +Gi+KV+PP++W     
   mKIAA4034    68    ECPVFEPSWEEFADPFAFIHK--IRPIAEQTGICKVRPPPDW----- 107  

                   GkPpcald<-*
                    +Pp+a+d   
   mKIAA4034   108 -QPPFACD    114  

ARID: domain 1 of 1, from 131 to 239: score 120.2, E = 4e-32
                   *->eaqtrerkeFldrLikFmekrgtpltkiPvvgkkeLDLYrLyrlVke
                      eaqtr++++Fld+++k +e +g+ ++kiP+v++k+LDL+ L +lV+e
   mKIAA4034   131    EAQTRVKLNFLDQIAKYWELQGS-TLKIPHVERKILDLFQLNKLVAE 176  

                   kGGfqqVtkdkkWseiareLgipdsisRGVPSsagslLrshYmryLypfE
                   +GGf  V+kd+kW +ia+  g  +++      + gs +r hY+r+L p++
   mKIAA4034   177 EGGFAVVCKDRKWTKIATKMGFAPGK------AVGSHIRGHYERILNPYN 220  

                   cyeeeenlpdeteaamdme<-*
                    + ++ +l+  + ++       
   mKIAA4034   221 LFLSGDSLRCLQKPNLTSD    239  

PHD: domain 1 of 2, from 348 to 396: score 68.7, E = 1.2e-16
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C +Cg+++d  +++ll+CDgCd+++H++Cl ppl ++p+g+W+Cp+
   mKIAA4034   348    VCLLCGSGND--EDRLLLCDGCDDSYHTFCLVPPLHDVPKGDWRCPK 392  

                   Ctpk<-*
                   C +    
   mKIAA4034   393 CLAQ    396  

JmjC: domain 1 of 1, from 523 to 639: score 225.0, E = 1.1e-63
                   *->wlyiGmpfSttpwHiedqglySinylhfgapkvWYaiPpeyaekfek
                      wly+Gm+fS+++wHied+++ySinylh+g+pk+WY++P+  ae++e 
   mKIAA4034   523    WLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVPGYAAEQLE- 568  

                   lhkflskhfsapdleggeqpdhDlrhlvtlisPkvlpLlenGipvyrfvQ
                     ++++k   ap+l +++qpd+ l++lvt+++P++  L  + +pvyr++Q
   mKIAA4034   569 --NVMKKL--APEL-FVSQPDL-LHQLVTIMNPNT--LMTHEVPVYRTNQ 610  

                   kpGEfVftfPgayHqvfNlGfniaeavNF<-*
                   ++GEfV+tfP+ayH++fN Gfn+aeavNF   
   mKIAA4034   611 CAGEFVITFPRAYHSGFNQGFNFAEAVNF    639  

zf-C5HC2: domain 1 of 1, from 729 to 782: score 113.9, E = 3.1e-30
                   *->CqiCkttlyLSAvvCsCspnklvCLeCALRHvkdLCssCepkdltLl
                      C++Cktt+++SA++CsC+p +lvCL+    Hvk+LCs C+p+++ L+
   mKIAA4034   729    CIKCKTTCFMSAISCSCKPGLLVCLH----HVKELCS-CPPYKYNLR 770  

                   YRYtlDeLpsLv<-*
                   YRYtlD+L++++   
   mKIAA4034   771 YRYTLDDLYPMM    782  

PHD: domain 2 of 2, from 1215 to 1261: score 49.9, E = 5.6e-11
                   *->yCsvCgkpdddaggdllqCDgCdrwfHlaClgppleeppegkWlCpe
                       C +C+k    +   ++qC+ C ++fH++C+  p +   +  WlCp+
   mKIAA4034  1215    VC-LCQK---TPATPMIQCELCRDAFHTSCVAAPSISQSSRIWLCPH 1257 

                   Ctpk<-*
                   C+++   
   mKIAA4034  1258 CRRS    1261 

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