hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbh/mbh03479/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4031  ( 374 res)   mbh03479

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PB1      PB1 domain                                      74.4    2.4e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PB1        1/1      59   138 ..     1    89 []    74.4  2.4e-18

Alignments of top-scoring domains:
PB1: domain 1 of 1, from 59 to 138: score 74.4, E = 2.4e-18
                   *->tvdvKlrYgggirrtfilsvsrdisfeeLrskvakrfgldvtfklkY
                      +v++K++++g++r+   +++sr++++e++ +kv+ +fg+  +++l+Y
   mKIAA4031    59    DVRIKFEHNGERRI---IAFSRPVRYEDVEHKVTTVFGQ--PLDLHY 100  

                   pDeDgDdlVsissDeDLeeaieeyrsllsesk.k.tLrlfvfpa<-*
                    ++++   +++++++DL++ai++++++    +++++Lr+++  +   
   mKIAA4031   101 MNNEL--SILLKNQDDLDKAIDILDRS----SsMkSLRILLLSQ    138  

//