hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mbg/mbg21384/w3open/interpro/cnk_1/seq.in
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Query:  mKIAA4030  ( 681 res)   mbg21384

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PA             PA domain                                102.0    1.2e-26   1
Glyco_hydro_47 Glycosyl hydrolase family 47              72.4    6.2e-18   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
Glyco_hydro_47   1/1       1   249 [.     1   518 []    72.4  6.2e-18
PA               1/1     425   530 ..     1   111 []   102.0  1.2e-26

Alignments of top-scoring domains:
Glyco_hydro_47: domain 1 of 1, from 1 to 249: score 72.4, E = 6.2e-18
                   *->MFqHAWdgYkkYAwghDELkPiscrgrkrdndPsnlhssdifGesnl
                                                                     
   mKIAA4030     -    ----------------------------------------------- -    

                   gaTivDaLDTLyiMGledEfreAvdwveetlsfdnplidstVsVFEtTIR
                                                                     
   mKIAA4030     - -------------------------------------------------- -    

                   vlGGLLSAYaLtgdpkklgdvegsdydkmLLkKAvdlAdrLLpAFnTptG
                                                                     
   mKIAA4030     - -------------------------------------------------- -    

                   IPysrvNlksgvaknytwasggssilAefGTLlLEFtyLSrLTGdptYek
                                                                    +
   mKIAA4030     1 -------------------------------------------------E 1    

                   karkardaLwklrpscekpeGLypnyinpqtGqqwtqshislGAggDGSf
                    arka d+Lw+ r    +   L++  in++tG +w ++++++GAg+D S+
   mKIAA4030     2 YARKALDFLWEKR---QRSSNLVGVTINIHTG-DWVRKDSGVGAGID-SY 46   

                   YEYLlKayiltgktdleakdmyneAieAikkhlrrqskpsgLtyfaelkn
                   YEYLlKay+l+g+ +   ++++n +++Ai++++   +       + +++ 
   mKIAA4030    47 YEYLLKAYVLLGDDSF--LERFNTHYDAIMRYISQPPL------LLDVHI 88   

                   grfkilepkmdHLaCFdGGlfalgadsldaffpgEvlqvlegdkeiaitc
                   ++            ++  +   +++d l+affpg  lqvl+gd   ai++
   mKIAA4030    89 HK-----------PMLNAR---TWMDALLAFFPG--LQVLKGDIRPAIET 122  

                   HemYdrtwtklGpepfrFneaveksdqlslyeaaavkvlellafypLRPE
                   Hem +++++k+ ++p+ F+ ++               v++  a +pLRPE
   mKIAA4030   123 HEMLYQVIKKHNFLPEAFTTDFR--------------VHW--AQHPLRPE 156  

                   viEStyyLYRNIaTkdpkmPTTNEYrewgweavqalekycRvkcGgglss
                   + ESty+LY   aT+dp+      Y+e+g+  +++l+ky+Rv+cG     
   mKIAA4030   157 FAESTYFLYK--ATGDPY------YLEVGKTLIENLNKYARVPCG----- 193  

                   RyaglrnVytksigskeDrMESFfLAETlKYLYLlFdddnalqvellpld
                    +a+ ++V+t+s    eDrM SFfLAE +KYLYLlF+d +   + +++ +
   mKIAA4030   194 -FAAMKDVRTGSH---EDRMDSFFLAEMFKYLYLLFADKE---DIIFDIE 236  

                   kctdevqgnwVFNTEAHPlpi<-*
                   +        ++F+TEAH lp+   
   mKIAA4030   237 D--------YIFTTEAHLLPL    249  

PA: domain 1 of 1, from 425 to 530: score 102.0, E = 1.2e-26
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                      ++++  t+++V   ++ n    +C+   +  +p+ v GKI+L++rG+
   mKIAA4030   425    LSkHKETRGFVASSKPYN----GCS---ELTNPEAVMGKIALIQRGQ 464  

                   csfaeKaanAqaAGAaGvIiynnpddglevmap.etdsndkkdpdshgiP
                   c faeKa+n+q+AGA+G I+++++ +++ ++ap +++++d kd+d++ iP
   mKIAA4030   465 CMFAEKARNIQNAGAIGGIVIDDNEGSSSDTAPlFQMAGDGKDTDDIKIP 514  

                   avfvskedGeallsyi<-*
                    +f+ +++G  +l+ i   
   mKIAA4030   515 MLFLFSKEGSIILDAI    530  

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